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thelovelab / fishpond

Differential expression and allelic analysis, nonparametric statistics
https://thelovelab.github.io/fishpond
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R CMD check WARNING: Requires (indirectly) orphaned package: ‘gtools’ #26

Closed DongzeHE closed 2 years ago

DongzeHE commented 2 years ago

Hello @mikelove,

I got a warning when doing R CMD check for the roe package saying that an orphaned package is indirectly required. gtools is a dependency in fishpond. 

  ❯ checking package dependencies ... WARNING
  Requires (indirectly) orphaned package: ‘gtools’

I think this happened very recently because I did not see this warning last month. The only effect is that this warning made my github actions unhappy :(.

In the package's webpage, it shows that the maintainer is ORPHANED. 

Version: | 3.9.2.2
-- | --
Depends: | R (≥ 2.10), methods, stats, utils
Suggests: | car, gplots, knitr, rstudioapi, SGP, taxize
Published: | 2022-06-13
Author: | Gregory R. Warnes, Ben Bolker, Thomas Lumley and CRAN team
Maintainer: | ORPHANED

Just want to report this. As gools is a widely used package, maybe someone will take the maintainership soon.

Dongze

mikelove commented 2 years ago

Interesting. We have a key function gtools::permutations() that we use in swish(). I likewise think it would be picked up soon bc it is broadly used…

mikelove commented 2 years ago

For now maybe ignore the warning?

https://stackoverflow.com/a/72226230

DongzeHE commented 2 years ago

Great. Ignoring the warning made the GitHub actions happy. Thanks!

Dongze