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thelovelab / fishpond

Differential expression and allelic analysis, nonparametric statistics
https://thelovelab.github.io/fishpond
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Feat: Adding more pre-defined output formats for the loadFry function #32

Closed DongzeHE closed 1 year ago

DongzeHE commented 1 year ago

Hi @mikelove,

As CellRanger 7 includes both spliced and unspliced counts in their count matrix, we want to mimic this behavior by adding more pre-defined output formats in the loadFry function. We added "all" and "U+S+A" to include all counts in the count matrix. Moreover, now the "scRNA" output format has an "unspliced" field, which contains the unspliced count matrix.

Best, Dongze

mikelove commented 1 year ago

Great! I'll push to devel branch now.