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thelovelab / tximeta

Transcript quantification import with automatic metadata detection
https://thelovelab.github.io/tximeta/
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What if one can't connect to internet #6

Closed mikelove closed 5 years ago

mikelove commented 6 years ago 
fetching genome info
Error in download.file(url, destfile, quiet = TRUE) : 
  cannot open URL 'http://hgdownload.cse.ucsc.edu/goldenPath/hg38/database/chromInfo.txt.gz'
Calls: tximeta ... fetchExtendedChromInfoFromUCSC -> FUN -> fetch_ChromInfo_from_UCSC -> download.file
In addition: Warning message:
In download.file(url, destfile, quiet = TRUE) :
  URL 'http://hgdownload.cse.ucsc.edu/goldenPath/hg38/database/chromInfo.txt.gz': status was 'Couldn't resolve host name'
Calls: tximeta ... fetchExtendedChromInfoFromUCSC -> FUN -> fetch_ChromInfo_from_UCSC -> download.file
mikelove commented 5 years ago

added skipMeta argument