search

thelovelab / tximport

Transcript quantification import for modular pipelines
136 stars 33 forks source link

better warning if no tx2gene provided #10

Closed mikelove closed 8 years ago

mikelove commented 8 years ago

if users don't provide a tx2gene argument, this could either be a mistake -- they didn't know they needed to tell the function which tx belong to which genes -- or they could want to have tx-level output, the current warning is:

Error: all(c(geneIdCol, lengthCol, abundanceCol) %in% names(raw)) is not TRUE

this could say, either provide tx2gene or specify txOut=TRUE