search

thelovelab / tximport

Transcript quantification import for modular pipelines
136 stars 33 forks source link

lose transcript names for salmon inferential replicates #39

Closed cindywen96 closed 4 years ago

cindywen96 commented 4 years ago

Hello! I was using the following command to import salmon quantification with bootstraps txi <- tximport(files, type="salmon", txOut=TRUE, dropInfReps=FALSE, varReduce=FALSE) problem is the output lost the transcript names, just 1,2,3...for row names. It was fine when I use the following command, without bootstraps txi <- tximport(files, type="salmon", txOut=TRUE, dropInfReps=TRUE) Has anyone had similar issue?