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thelovelab / tximport

Transcript quantification import for modular pipelines
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edgeR::cpm #45

Closed ATpoint closed 3 years ago

ATpoint commented 3 years ago

Since v3.32.0 edgeR can directly use offsets in its cpm methods, see http://bioconductor.org/packages/release/bioc/news/edgeR/NEWS so one does not need the path via csaw/SummarizedExperiment anymore. Adding as "edgeR::cpm" rather than "cpm" alone since the SingleCellExperiment package masks the cpm function.

mikelove commented 3 years ago

That's great, thanks Alexander. Will update (and can now remove a Suggests dependency)

mikelove commented 3 years ago

Some more edits and a thanks here: 18a9699