Tiny change in the vignette for the limma-voom/edgeR parts to make filterByExpr() use the design information. That will remove the warning that is currently printed (Warning in filterByExpr.DGEList(y):...) and is exactly what ?filterByExpr recommends in its example section.
Tiny change in the vignette for the
limma-voom/edgeR
parts to makefilterByExpr()
use the design information. That will remove the warning that is currently printed (Warning in filterByExpr.DGEList(y):...
) and is exactly what?filterByExpr
recommends in its example section.