thelovelab / tximport

Transcript quantification import for modular pipelines
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Add initial support for `piscem-infer` #56

Closed rob-p closed 11 months ago

rob-p commented 11 months ago

This adds support for piscem-infer to tximport. This PR provides the ability to load both the quantifications as well as the inferential replicates if they are present. See the commit message for more details. Note: To load the inferential replicates, which are stored in Parquet format, this makes use of the arrow package, which the user must have installed. If it is not installed, this will issue a warning to that effect.