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thelovelab / tximport

Transcript quantification import for modular pipelines
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Move `DESeqDataSetFromTximport` into tximport for now? #7

Closed mdshw5 closed 8 years ago

mdshw5 commented 8 years ago

Since the DESeqDataSetFromTximport function is only available in the development version of DESeq2, does it make sense to move the function into tximport until the next DESeq2 stable release?

mikelove commented 8 years ago

I'd rather it stay in its native environment. Some users work in the devel branch so testing there makes sense.

If you want to use it without installing R-devel you can grab the code here:

https://github.com/Bioconductor-mirror/DESeq2/blob/master/R/AllClasses.R#L318-L333

mdshw5 commented 8 years ago

Great, thanks.

Matt Shirley

On Dec 11, 2015, at 9:28 AM, Mike Love notifications@github.com wrote:

I'd rather it stay in its native environment. Some users work in the devel branch so testing there makes sense.

If you want to use it without installing R-devel you can grab the code here:

https://github.com/Bioconductor-mirror/DESeq2/blob/master/R/AllClasses.R#L318-L333

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