matt-chan
commented
6 years ago Ah the version of Horton in the pyqc channel is pretty old. Try using the one in the theochem channel. That should be up to date. There shouldn't be anything broken in the pyqc one, but it's been at least a year since we tested that one. On Tue, Dec 19, 2017 at 2:51 PM Erik Kjellgren notifications@github.com wrote:
I have a project were I utilize Horton, but when I try to use automated testing with Travis CI on github, it seem to fail. I set up my travis as:
language: python python:
- 2.7
os: linux
install:
- sudo apt-get update
- wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh -O miniconda.sh;
- bash miniconda.sh -b -p $HOME/miniconda
- export PATH="$HOME/miniconda/bin:$PATH"
- hash -r
- conda config --set always_yes yes --set changeps1 no
- conda update -q conda
- conda info -a
- conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION
- source activate test-environment
- conda install numpy scipy pytest numba dill sh
- conda install -c pyqc horton
- pip install python-coveralls pytest-cov
script:
- if [[ $TRAVIS_PYTHONVERSION == 2.7 ]]; then pytest -vv data/testfiles/test.py --cov; else pytest -vv data/testfiles/test_.py; fi
after_success:
- if [[ $TRAVIS_PYTHON_VERSION == 2.7 ]]; then coveralls; fi
notifications: email: false
When I run test that imports Horton I get the following error:
_ ERROR collecting data/testfiles/test_program.py __
ImportError while importing test module '/home/travis/build/Melisius/propertyfit/data/testfiles/test_program.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
../../../miniconda/envs/test-environment/lib/python2.7/site-packages/_pytest/python.py:403: in _importtestmodule
mod = self.fspath.pyimport(ensuresyspath=importmode)../../../miniconda/envs/test-environment/lib/python2.7/site-packages/py/_path/local.py:668: in pyimport
__import__(modname)../../../miniconda/envs/test-environment/lib/python2.7/site-packages/_pytest/assertion/rewrite.py:212: in load_module
py.builtin.exec_(co, mod.__dict__)data/testfiles/test_program.py:11: in
from propertyfit.structures import structure, constraintspropertyfit/structures.py:4: in
import horton../../../miniconda/envs/test-environment/lib/python2.7/site-packages/horton/init.py:33: in
from horton.part import *../../../miniconda/envs/test-environment/lib/python2.7/site-packages/horton/part/init.py:30: in
from horton.part.mulliken import *../../../miniconda/envs/test-environment/lib/python2.7/site-packages/horton/part/mulliken.py:26: in
from horton.gbasis.cext import get_shell_nbasis../../../miniconda/envs/test-environment/lib/python2.7/site-packages/horton/gbasis/init.py:24: in
from horton.gbasis.cext import *E ImportError: /home/travis/miniconda/envs/test-environment/lib/python2.7/site-packages/horton/gbasis/cext.so: undefined symbol: cblas_daxpy
It seems like it can import "most" Horton, but not the file "cext.so". Is there a requirement for Horton that does not get install by the "conda install -c pyqc horton"?
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/theochem/horton/issues/284, or mute the thread https://github.com/notifications/unsubscribe-auth/AA_-NZ6H1Qp3VUxBdCgQE2nZV880_o9aks5tCBPKgaJpZM4RHeLd .
-- Matt
Sent from my phone
erikkjellgren
I have a project were I utilize Horton, but when I try to use automated testing with Travis CI on github, it seem to fail. I set up my travis as:
When I run test that imports Horton I get the following error:
It seems like it can import "most" Horton, but not the file "cext.so". Is there a requirement for Horton that does not get install by the "conda install -c pyqc horton"?