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theosanderson / taxonium

A tool for exploring large trees in the browser
http://taxonium.org
GNU General Public License v3.0
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Treenome: non-SARS-CoV-2 genomes with --only_variable_sites #351

Closed theosanderson closed 2 years ago

theosanderson commented 2 years ago

I found that mpx.taxonium.org was only showing the first 2000 bp of the monkeypox genome. This is because it was created with --only_variable_sites in taxoniumtools which only captures the reference for variable sites to avoid very slow loading. I fixed this in https://github.com/theosanderson/taxonium/commit/113ff75d068f5e46516758e7ba6afd56d54ad958 which I accidentally pushed to master but it seems to work thankfully. For info @amkram

amkram commented 2 years ago

Thanks for catching that! Glad it's still able to work with just the variable sites.