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theosanderson / taxonium

A tool for exploring very large trees in the browser
http://taxonium.org
GNU General Public License v3.0
98 stars 17 forks source link

Jbrowse fix and update #568

Open amkram opened 9 months ago

amkram commented 9 months ago

This updates jbrowse (for treenome browser) to 2.10.0, and also adds jbrowse peer dependencies I overlooked. The update (or peer deps) thankfully also seems to fix issues loading bam files.

vercel[bot] commented 9 months ago

The latest updates on your projects. Learn more about Vercel for Git ↗︎

Name Status Preview Comments Updated (UTC)
cov2tree ❌ Failed (Inspect) Dec 19, 2023 0:21am
theosanderson commented 8 months ago

Hey @amkram,

Sorry, I just stumbled across this in the PRs - I'd completely missed it, sorry that it probably got lost in pre-Christmas issues. It looks like the vercel preview is failing to build atm with:


error during build:
--
00:21:42.601 | Error: Could not load /vercel/path0/taxonium_component/node_modules/stream-browserify/web: ENOENT: no such file or directory, open '/vercel/path0/taxonium_component/node_modules/stream-browserify/web'
00:21:42.716 | error Command failed with exit code 1.
00:21:42.717 | info Visit https://yarnpkg.com/en/docs/cli/run for documentation about this command.
00:21:42.746 | error Command failed with exit code 1.
00:21:42.746 | info Visit https://yarnpkg.com/en/docs/cli/install for documentation about this command.
00:21:42.772 | Error: Command "yarn install" exited with 1

We still seem to be using Node 18 on vercel, in case that's relevant. Let me know if there's anything you need from me to help on the PR, sorry again for the delay.