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thermofisherlsms / meth-modifications

XML-based Method Modifications
MIT License
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Error when running Fusion/TMS2Independent example #26

Open cwenger opened 1 month ago

cwenger commented 1 month ago

I am getting an error when I try to run the Fusion/TMS2Independent example. The full error with stack trace is:

xmlmethodchanger\bin\Release\XmlMethodChanger.exe -i examples\Fusion\TMS2Independent\TMS2IndependentTemplate.meth -m examples\Fusion\TMS2Independent\TMS2Independent.xml -o examples\Fusion\TMS2Independent\TMS2Independent.meth

template: examples\Fusion\TMS2Independent\TMS2IndependentTemplate.meth xml: examples\Fusion\TMS2Independent\TMS2Independent.xml output: examples\Fusion\TMS2Independent\TMS2Independent.meth model:  version:
model: OrbitrapFusion version:
ERROR - Error Importing Update Instructions XML
ExceptionSystem.ArgumentNullException: Value cannot be null.
Parameter name: source
   at System.Linq.Enumerable.Select[TSource,TResult](IEnumerable`1 source, Func`2 selector)
   at Thermo.TNG.Calcium.MethodXML.ModificationsImporter.HandleActivationParams(TMSnScan tMSNScan, CalciumTMSnScan mScan)
   at Thermo.TNG.Calcium.MethodXML.ModificationsImporter.ApplyModification(CalciumMethod method, Int32 index, TMSnScan tMSNScan, String label, Boolean requireModification)
   at Thermo.TNG.Calcium.MethodXML.ModificationsImporter.ApplyModification(CalciumMethod method, Experiment expModification, Int32 expIndex, CalciumExperiment experiment, String targetLabel, Boolean requireModification)
   at Thermo.TNG.Calcium.MethodXML.ModificationsImporter.ApplyModification(CalciumMethod method, Experiment exp)
   at Thermo.TNG.Calcium.MethodXML.ModificationsImporter.ApplyModification(CalciumMethod method, Modification mod)
   at Thermo.TNG.Calcium.MethodXML.ModificationsImporter.<>c__DisplayClass0_0.<Import>b__0(Modification o)
   at System.Collections.Generic.List`1.ForEach(Action`1 action)
   at Thermo.TNG.Calcium.MethodXML.ModificationsImporter.Import(CalciumMethod method, MethodModifications data)
   at Thermo.TNG.Calcium.MethodXML.CalciumMethodXML.ApplyMethodModifications(MethodModifications data)
   at Thermo.TNG.Common.Method.MethodXML`2.ApplyMethodModificationsFromXML(String xmlData)

The Fusion/TMS2Dependent example works, while the Fusion/DIA example also fails, so it seems to be related to TMSnScan nodes.

jesse-canterbury commented 2 weeks ago

Sorry for the delay on this. It's on our radar.