Closed GoogleCodeExporter closed 8 years ago
GoogleCodeExporter
commented
8 years ago I forgot to mention.
Before that error I've error with localhost (when I just run
"interproscan.sh"). I've modidied /etc/hosts file adding "ip094183" at the end
of
127.0.0.1 localhost
"interproscan.sh" alone show info as specified in manualOriginal comment by maciejjo...@gmail.com on 1 Jul 2013 at 12:56
GoogleCodeExporter
commented
8 years ago It seems the coils binary is not working on your system. You can verify this by
checking if the following command runs successfully:
./interproscan.sh -i test_proteins.fasta -f tsv -appl gene3d
but the following fails:
./interproscan.sh -i test_proteins.fasta -f tsv -appl coils
The binaries that we distribute with InterProScan should work on most Linux
systems. In your case you may have to compile the coils binary for your system
for it to work.
You will find further information on how to compile binaries here:
http://code.google.com/p/interproscan/wiki/CompilingBinaries
Regards,
GiftOriginal comment by nuka....@gmail.com on 1 Jul 2013 at 1:42
GoogleCodeExporter
commented
8 years ago Thanks for feedback.
You are right coils doesn't work.
I try to compile it as written under link you provided but after I execute
"cc -O2 -I. -o ncoils-osf ncoils.c read_matrix.c -lm"
I'm getting error
ncoils.c: In function ‘main’:
ncoils.c:41:2: warning: incompatible implicit declaration of built-in function
‘strcpy’ [enabled by default]
ncoils.c:42:19: warning: incompatible implicit declaration of built-in function
‘strlen’ [enabled by default]
ncoils.c: In function ‘pred_coils’:
ncoils.c:188:6: warning: incompatible implicit declaration of built-in function
‘strlen’ [enabled by default]
read_matrix.c: In function ‘read_matrix’:
read_matrix.c:17:11: warning: incompatible implicit declaration of built-in
function ‘strlen’ [enabled by default]
I'm also not able to run ncoils-osf and ncolis-irix
Original comment by maciejjo...@gmail.com on 2 Jul 2013 at 8:45
GoogleCodeExporter
commented
8 years ago If compiling coils didn't work you will need to get in touch with the developer
to see if they can help - robert.russell@russelllab.org
CraigOriginal comment by interpro...@googlemail.com on 5 Aug 2013 at 1:09
GoogleCodeExporter
commented
8 years ago Original comment by Maxim.Sc...@gmail.com on 15 May 2014 at 9:10
Original issue reported on code.google.com by
maciejjo...@gmail.comon 1 Jul 2013 at 12:49