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thibautjombart / adegenet

adegenet: a R package for the multivariate analysis of genetic markers
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"Duplicate" Locations Due to Rounding #157

Closed neellab-umd closed 8 years ago

neellab-umd commented 8 years ago

I call chooseCN for a genind object that holds genetic and spatial data for 374 unique genotypes at unique locations. The minimum distance between nearest neighbors is 5 m. Although all my locations are in unique, are being pooled due to rounding. It appears the lines 91 & 92 are adjusting the minimum distances.

91 d2min <- max(apply(tempmat, 1, function(r) min(r[r>1e-12]))) 92 d2min <- d2min * 1.0001 # to avoid exact number problem

Rounding to 1.0001 is collapsing samples that are 7-10 m apart given my latitude. Is it possible to change this rounding without causing downstream problems? I screen out true duplicates before getting to this point and would like to be able to use all of the samples.

Thank you!

thibautjombart commented 8 years ago

Should be fixed at 40dcdde885a1020bf135 - see new argument check.duplicates which you need to set to TRUE. Can you check if it now works with the devel version?

neellab-umd commented 8 years ago

Thank you! But I get the same error.

I am not sure I am getting the correct version I reinstalled adegenet as follows.

install_github("thibautjombart/adegenet")

Do I need to specify a development version prior this install?

Apologies for the basic question.

Maile Neel Associate Professor; Director of the Norton-Brown Herbarium University of Maryland Department of Plant Science and Landscape Architecture & Department of Entomology

Office Phone (301) 405-9780 Cellular Phone (301) 395-0403

Lab Website: http://alyxia.umd.edu Herbarium Website: http://nbh.psla.umd.edu

On Mon, Oct 24, 2016 at 7:01 AM, Thibaut Jombart notifications@github.com wrote:

Should be fixed at 40dcdde https://github.com/thibautjombart/adegenet/commit/40dcdde885a1020bf135ae603199f7e38a75a289 Can you check if it now works with the devel version?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/thibautjombart/adegenet/issues/157#issuecomment-255710600, or mute the thread https://github.com/notifications/unsubscribe-auth/ATQmr42GCbjxEdPo5AT37rrJgCgceDAVks5q3JAggaJpZM4Ken99 .

thibautjombart commented 8 years ago

Surprising.. can you post a reproducible example?

On 25 Oct 2016 19:37, "neellab-umd" notifications@github.com wrote:

Thank you! But I get the same error.

I am not sure I am getting the correct version I reinstalled adegenet as follows.

install_github("thibautjombart/adegenet")

Do I need to specify a development version prior this install?

Apologies for the basic question.

Maile Neel Associate Professor; Director of the Norton-Brown Herbarium University of Maryland Department of Plant Science and Landscape Architecture & Department of Entomology

Office Phone (301) 405-9780 Cellular Phone (301) 395-0403

Lab Website: http://alyxia.umd.edu Herbarium Website: http://nbh.psla.umd.edu

On Mon, Oct 24, 2016 at 7:01 AM, Thibaut Jombart <notifications@github.com

wrote:

Should be fixed at 40dcdde https://github.com/thibautjombart/adegenet/commit/ 40dcdde885a1020bf135ae603199f7e38a75a289 Can you check if it now works with the devel version?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/thibautjombart/adegenet/issues/157#issuecomment- 255710600, or mute the thread https://github.com/notifications/unsubscribe-auth/ ATQmr42GCbjxEdPo5AT37rrJgCgceDAVks5q3JAggaJpZM4Ken99 .

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neellab-umd commented 8 years ago

Hi Thibaut -

I am checking through everything to see if I am doing something wrong. If I exhaust my possibilities and still cannot get it to work I will post my data and code.

Thank you!

Maile

Maile Neel Associate Professor; Director of the Norton-Brown Herbarium University of Maryland Department of Plant Science and Landscape Architecture & Department of Entomology

Office Phone (301) 405-9780 Cellular Phone (301) 395-0403

Lab Website: http://alyxia.umd.edu Herbarium Website: http://nbh.psla.umd.edu

On Tue, Oct 25, 2016 at 3:06 PM, Thibaut Jombart notifications@github.com wrote:

Surprising.. can you post a reproducible example?

On 25 Oct 2016 19:37, "neellab-umd" notifications@github.com wrote:

Thank you! But I get the same error.

I am not sure I am getting the correct version I reinstalled adegenet as follows.

install_github("thibautjombart/adegenet")

Do I need to specify a development version prior this install?

Apologies for the basic question.

Maile Neel Associate Professor; Director of the Norton-Brown Herbarium University of Maryland Department of Plant Science and Landscape Architecture & Department of Entomology

Office Phone (301) 405-9780 Cellular Phone (301) 395-0403

Lab Website: http://alyxia.umd.edu Herbarium Website: http://nbh.psla.umd.edu

On Mon, Oct 24, 2016 at 7:01 AM, Thibaut Jombart < notifications@github.com

wrote:

Should be fixed at 40dcdde https://github.com/thibautjombart/adegenet/commit/ 40dcdde885a1020bf135ae603199f7e38a75a289 Can you check if it now works with the devel version?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/thibautjombart/adegenet/issues/157#issuecomment- 255710600, or mute the thread https://github.com/notifications/unsubscribe-auth/ ATQmr42GCbjxEdPo5AT37rrJgCgceDAVks5q3JAggaJpZM4Ken99 .

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neellab-umd commented 8 years ago

library(devtools) dev_mode(on=T) install_github("thibautjombart/adegenet") library(adegenet)

Read text file into dataframe

hudson_noreps_coords<- read.table("hudson_noreps_coords.txt", sep="\t", header=TRUE) dim(hudson_noreps_coords)

Read dataframe into a genind object including 2 example loci and population names

hudson_noreps_coords.ind <- df2genind(hudson_noreps_coords[,9:10], ploidy=2, sep=":", type = "codom", ind.names=hudson_noreps_coords$Sample, pop=hudson_noreps_coords$NewPop)

add latlong coordinates to the optional "other" data slot in the genind object

hudson_noreps_coords.ind$other$latlong <- hudson_noreps_coords[,5:6]

add utm coordinates to the optional "other" data slot in the genind object

hudson_noreps_coords.ind$other$utm <- hudson_noreps_coords[,7:8]

check the genind object

hudson_noreps_coords.ind # see the data are included under options pop(hudson_noreps_coords.ind) # get the populations indNames(hudson_noreps_coords.ind) # get the labels of individuals locNames(hudson_noreps_coords.ind) # get the labels of the loci alleles(hudson_noreps_coords.ind) # get the alleles

head(tab(hudson_noreps_coords.ind)) # get allele counts

get allele frequencies, replace NAs

head(tab(hudson_noreps_coords.ind, freq = TRUE, NA.method = "mean"))

Setting up for Monmonier's Algorithm

EucGenD <- dist(hudson_noreps_coords.ind$tab)

Below is the code that yields the issue.

hudnet <- chooseCN(hudson_noreps_coords.ind$other$latlong,ask=FALSE,type=1, check.duplicates = TRUE) hudnetutm <- chooseCN(hudson_noreps_coords.ind$other$utm,ask=FALSE,type=1, check.duplicates = TRUE)

I get the error:

Error in chooseCN(hudson_noreps_coords.ind$other$latlong, ask = FALSE, :

Duplicate locations detected and incompatible with graph type 1-4.

Please choose another graph (5-7) or add random noise to locations (see ?jitter).

check why chooseCN did not work for latlongs.

duplicated(hudson_noreps_coords.ind@other$latlong) # shows that there are no real dups (all FALSE) any(xyTable(hudson_noreps_coords$Longitude,hudson_noreps_coords$Latitude)$number > 1) # dups due to rounding (TRUE) sunflowerplot(hudson_noreps_coords$Longitude,hudson_noreps_coords$Latitude) #shows rounded dups connected by red lines

check why chooseCN did not work for utms.

duplicated(hudson_noreps_coords.ind@other$utm) # shows that there are no real dups (all FALSE) any(xyTable(hudson_noreps_coords$east,hudson_noreps_coords$north)$number > 1) # dups due to rounding (TRUE) sunflowerplot(hudson_noreps_coords$east,hudson_noreps_coords$north)

shows rounded dups connected by red lines - fewer than latlongs

hudson_noreps_coords.txt

thibautjombart commented 8 years ago

So the fix works, but I gave you wrong instructions :-/

To disable checking duplicates, the correct argument is check.duplicates = FALSE.

Anyawy, it works for me on the data you posted.

neellab-umd commented 8 years ago

Thibaut I have attached a data file and the code that reproduces the error is below:

Thanks,

Maile

library(devtools) dev_mode(on=T) install_github("thibautjombart/adegenet") library(adegenet)

This path is for the data file on my latptop

hudson_noreps_coords<- read.table("hudson_noreps_coords.txt", sep="\t", header=TRUE) dim(hudson_noreps_coords)

Read dataframe into a genind object including 2 example loci and

population names hudson_noreps_coords.ind <- df2genind(hudson_noreps_coords[,9:10], ploidy=2, sep=":", type = "codom", ind.names=hudson_noreps_coords$Sample, pop=hudson_noreps_coords$NewPop)

add latlong coordinates to the optional "other" data slot in the genind

object hudson_noreps_coords.ind$other$latlong <- hudson_noreps_coords[,5:6]

add utm coordinates to the optional "other" data slot in the genind object

hudson_noreps_coords.ind$other$utm <- hudson_noreps_coords[,7:8]

check the genind object

hudson_noreps_coords.ind # see the data are included under options pop(hudson_noreps_coords.ind) # get the populations indNames(hudson_noreps_coords.ind) # get the labels of individuals locNames(hudson_noreps_coords.ind) # get the labels of the loci alleles(hudson_noreps_coords.ind) # get the alleles

head(tab(hudson_noreps_coords.ind)) # get allele counts

get allele frequencies, replace NAs

head(tab(hudson_noreps_coords.ind, freq = TRUE, NA.method = "mean"))

Setting up for Monmonier's Algorithm

EucGenD <- dist(hudson_noreps_coords.ind$tab)

Below is the code that yields the issue.

hudnet <- chooseCN(hudson_noreps_coords.ind$other$latlong,ask=FALSE,type=1, check.duplicates = TRUE) hudnetutm <- chooseCN(hudson_noreps_coords.ind$other$utm,ask=FALSE,type=1, check.duplicates = TRUE)

I get the error:

Error in chooseCN(hudson_noreps_coords.ind$other$latlong, ask = FALSE, :

Duplicate locations detected and incompatible with graph type 1-4.

Please choose another graph (5-7) or add random noise to locations (see

?jitter).

check why chooseCN did not work for latlongs.

duplicated(hudson_noreps_coords.ind@other$latlong) # shows that there are no real dups (all FALSE) any(xyTable(hudson_noreps_coords$Longitude,hudson_noreps_coords$Latitude)$number

1) # dups due to rounding (TRUE) sunflowerplot(hudson_noreps_coords$Longitude,hudson_noreps_coords$Latitude)

shows rounded dups connected by red lines

check why chooseCN did not work for utms.

duplicated(hudson_noreps_coords.ind@other$utm) # shows that there are no real dups (all FALSE) any(xyTable(hudson_noreps_coords$east,hudson_noreps_coords$north)$number > 1) # dups due to rounding (TRUE) sunflowerplot(hudson_noreps_coords$east,hudson_noreps_coords$north) #shows rounded dups connected by red lines - fewer than latlongs

Maile Neel Associate Professor; Director of the Norton-Brown Herbarium University of Maryland Department of Plant Science and Landscape Architecture & Department of Entomology

Office Phone (301) 405-9780 Cellular Phone (301) 395-0403

Lab Website: http://alyxia.umd.edu Herbarium Website: http://nbh.psla.umd.edu

On Wed, Oct 26, 2016 at 12:33 PM, Maile C Neel mneel@umd.edu wrote:

Hi Thibaut -

I am checking through everything to see if I am doing something wrong. If I exhaust my possibilities and still cannot get it to work I will post my data and code.

Thank you!

Maile

Maile Neel Associate Professor; Director of the Norton-Brown Herbarium University of Maryland Department of Plant Science and Landscape Architecture & Department of Entomology

Office Phone (301) 405-9780 Cellular Phone (301) 395-0403

Lab Website: http://alyxia.umd.edu Herbarium Website: http://nbh.psla.umd.edu

On Tue, Oct 25, 2016 at 3:06 PM, Thibaut Jombart <notifications@github.com

wrote:

Surprising.. can you post a reproducible example?

On 25 Oct 2016 19:37, "neellab-umd" notifications@github.com wrote:

Thank you! But I get the same error.

I am not sure I am getting the correct version I reinstalled adegenet as follows.

install_github("thibautjombart/adegenet")

Do I need to specify a development version prior this install?

Apologies for the basic question.

Maile Neel Associate Professor; Director of the Norton-Brown Herbarium University of Maryland Department of Plant Science and Landscape Architecture & Department of Entomology

Office Phone (301) 405-9780 Cellular Phone (301) 395-0403

Lab Website: http://alyxia.umd.edu Herbarium Website: http://nbh.psla.umd.edu

On Mon, Oct 24, 2016 at 7:01 AM, Thibaut Jombart < notifications@github.com

wrote:

Should be fixed at 40dcdde https://github.com/thibautjombart/adegenet/commit/ 40dcdde885a1020bf135ae603199f7e38a75a289 Can you check if it now works with the devel version?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/thibautjombart/adegenet/issues/157#issuecomment- 255710600, or mute the thread https://github.com/notifications/unsubscribe-auth/ ATQmr42GCbjxEdPo5AT37rrJgCgceDAVks5q3JAggaJpZM4Ken99 .

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/thibautjombart/adegenet/issues/157# issuecomment-256131919, or mute the thread https://github.com/notifications/unsubscribe-auth/AKQkIswy5 UMo2rzJVqkABYNnLtRaZrq0ks5q3kxOgaJpZM4Ken99 .

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Sample NewPop Full.Population.Name Clone.ID.2016 Longitude Latitude east north loc1 loc2 Site.1.1 CRO Croton 637 -73.87814233 41.18011753 594093.4448 4559358.703 159:159 376:385 Site.1.2 CRO Croton 63 -73.87807854 41.18000094 594098.9621 4559345.828 153:159 376:376 Site.1.3 CRO Croton 641 -73.87803596 41.17983724 594102.7678 4559327.701 159:159 376:400 Site.1.4 CRO Croton 658 -73.87791426 41.17975468 594113.0935 4559318.667 159:159 376:385 Site.1.5 CRO Croton 662 -73.87791376 41.17928697 594113.8051 4559266.744 150:159 376:391 Site.1.6 CRO Croton 663 -73.87794293 41.17908245 594111.6512 4559244.008 150:159 376:391 Site.1.8 CRO Croton 639 -73.8778291 41.17924615 594120.9644 4559262.304 159:159 376:385 Site.1.9 CRO Croton 664 -73.87791216 41.17941747 594113.7525 4559281.234 150:159 376:385 Site.1.10 CRO Croton 638 -73.87801677 41.17942552 594104.9667 4559282.014 159:159 376:385 Site.1.13 CRO Croton 640 -73.87807729 41.17982115 594099.3243 4559325.87 159:159 376:385 Site.1.16 CRO Croton 642 -73.87831374 41.18028349 594078.8304 4559376.941 159:159 376:376 Site.1.17 CRO Croton 643 -73.87834609 41.18041878 594075.9235 4559391.926 159:159 376:385 Site.1.18 CRO Croton 644 -73.87836646 41.1804725 594074.1381 4559397.867 153:159 376:376 Site.1.20 CRO Croton 64 -73.87866494 41.18047225 594049.1037 4559397.517 159:159 376:385 Site.1.21 CRO Croton 645 -73.87837392 41.18059362 594073.339 4559411.306 153:159 376:391 Site.1.22 CRO Croton 646 -73.87835104 41.18059253 594075.2596 4559411.209 159:159 376:385 Site.1.23 CRO Croton 647 -73.87832682 41.18064065 594077.2222 4559416.578 153:159 376:376 Site.1.24 CRO Croton 648 -73.87839563 41.1807186 594071.3393 4559425.157 159:159 376:385 Site.1.25 CRO Croton 649 -73.87851398 41.18082521 594061.2603 4559436.864 159:159 376:391 Site.1.26 CRO Croton 650 -73.87864432 41.18095664 594050.1402 4559451.314 159:159 376:391 Site.1.27 CRO Croton 651 -73.87878983 41.18097592 594037.9082 4559453.297 159:159 376:391 Site.1.28 CRO Croton 652 -73.87887776 41.18097835 594030.5297 4559453.472 159:159 376:385 Site.2.1 STK Stockport 863 -73.77807649 42.30750044 600708.8596 4684641.466 159:159 376:385 Site.2.3 STK Stockport 864 -73.77817774 42.30733221 600700.7828 4684622.667 159:159 376:385 Site.2.13 STK Stockport 732 -73.77834748 42.30709031 600687.1784 4684595.606 150:159 376:385 Site.2.22 STK Stockport 728 -73.7781852 42.30685838 600700.9232 4684570.045 159:159 376:391 Site.2.23 STK Stockport 729 -73.77809225 42.30694413 600708.4475 4684579.677 159:159 376:376 Site.2.24 STK Stockport 865 -73.77830666 42.30728745 600690.2286 4684617.544 150:159 376:376 Site.3.1 CHV Cheviot 951 -73.90573497 42.12555556 590446.6213 4664296.037 150:159 376:391 Site.3.2 CHV Cheviot 954 -73.90651071 42.1244105 590384.1293 4664168.076 150:159 376:391 Site.3.6 CHV Cheviot 952 -73.90637484 42.12460144 590395.0886 4664189.421 159:159 376:385 Site.3.11 CHV Cheviot 717 -73.90623596 42.12495382 590406.067 4664228.694 159:159 376:385 Site.3.13 CHV Cheviot 953 -73.90617033 42.12504845 590411.3572 4664239.27 159:159 376:385 Site.3.21 CHV Cheviot 713 -73.90594066 42.12536026 590429.8975 4664274.135 153:159 376:376 Site.3.30 CHV Cheviot 955 -73.90682587 42.12604539 590355.7555 4664349.27 159:159 376:385 Site.4.1 TPT Turning Point 966 -73.96647384 41.27907386 586554.0915 4570252.707 159:159 376:385 Site.4.2 TPT Turning Point 971 -73.96659069 41.279098 586544.2737 4570255.27 159:159 376:385 Site.4.3 TPT Turning Point 967 -73.96670636 41.27907906 586534.6117 4570253.052 159:159 376:385 Site.4.4 TPT Turning Point 975 -73.96673586 41.27908057 586532.1391 4570253.19 159:159 385:385 Site.4.5 TPT Turning Point 977 -73.96686385 41.27906271 586521.4439 4570251.08 153:159 376:376 Site.4.6 TPT Turning Point 24 -73.96696569 41.27902558 586512.9641 4570246.857 153:159 376:376 Site.4.7 TPT Turning Point 978 -73.96703543 41.27903405 586507.1123 4570247.727 153:159 376:376 Site.4.8 TPT Turning Point 979 -73.96709436 41.27902726 586502.186 4570246.915 153:159 376:376 Site.4.11 TPT Turning Point 968 -73.96747615 41.27889977 586470.3803 4570232.381 153:159 376:376 Site.4.12 TPT Turning Point 969 -73.96759727 41.27887689 586460.267 4570229.72 159:159 376:385 Site.4.19 TPT Turning Point 970 -73.96761026 41.2786168 586459.5224 4570200.833 153:159 376:376 Site.4.22 TPT Turning Point 972 -73.96736627 41.2786717 586479.8836 4570207.171 153:159 376:376 Site.4.25 TPT Turning Point 973 -73.96714884 41.27876038 586497.9758 4570217.232 153:159 376:376 Site.5.1 GIS Georges Island 980 -73.94174656 41.23493526 588684.6323 4565377.515 153:159 376:376 Site.5.2 GIS Georges Island 983 -73.94181479 41.23487717 588678.9929 4565370.996 153:159 376:391 Site.5.4 GIS Georges Island 746 -73.94181294 41.23476394 588679.301 4565358.428 153:159 376:376 Site.5.12 GIS Georges Island 981 -73.94154942 41.23422464 588702.1142 4565298.826 159:159 376:376 Site.5.15 GIS Georges Island 982 -73.94129184 41.23407972 588723.8967 4565283 159:159 376:385 Site.5.17 GIS Georges Island 24 -73.94124683 41.23420335 588727.5015 4565296.771 159:159 385:391 Site.5.27 GIS Georges Island 984 -73.94147255 41.23476218 588707.8295 4565358.58 153:159 376:376 Site.6.1 TNB Tivoli North Bay 988 -73.92548122 42.04516548 588926.6806 4655349.401 159:159 391:391 Site.6.2 TNB Tivoli North Bay 990 -73.92551123 42.0451555 588924.2109 4655348.261 153:159 376:376 Site.6.3 TNB Tivoli North Bay 717 -73.92556873 42.04502374 588919.6359 4655333.572 153:159 376:376 Site.6.6 TNB Tivoli North Bay 993 -73.9256295 42.04491352 588914.7602 4655321.271 159:159 376:391 Site.6.7 TNB Tivoli North Bay 713 -73.9256575 42.04487337 588912.4989 4655316.784 159:159 376:385 Site.6.8 TNB Tivoli North Bay 994 -73.92572715 42.04477195 588906.876 4655305.451 159:159 376:385 Site.6.9 TNB Tivoli North Bay 820 -73.92581759 42.04470607 588899.483 4655298.042 159:159 391:391 Site.6.11 TNB Tivoli North Bay 779 -73.92584349 42.04454765 588897.5603 4655280.425 159:159 385:391 Site.6.13 TNB Tivoli North Bay 989 -73.92596226 42.04433148 588888.0321 4655256.3 159:159 376:376 Site.6.22 TNB Tivoli North Bay 991 -73.92552012 42.04438118 588924.555 4655262.278 159:159 376:385 Site.6.24 TNB Tivoli North Bay 834 -73.92547276 42.04445779 588928.3678 4655270.833 159:159 376:385 Site.7.1 RIS Rogers Island 995 -73.84644868 42.21140225 595218.1548 4673892.457 159:159 376:391 Site.7.2 RIS Rogers Island 1001 -73.84663501 42.21139463 595202.7857 4673891.403 159:159 385:385 Site.7.3 RIS Rogers Island 931 -73.84663308 42.21130553 595203.0788 4673881.512 159:159 385:385 Site.7.6 RIS Rogers Island 1016 -73.84673174 42.21114468 595195.1765 4673863.542 159:159 376:385 Site.7.8 RIS Rogers Island 1008 -73.84681061 42.21095382 595188.9528 4673842.262 159:159 376:376 Site.7.10 RIS Rogers Island 996 -73.84683182 42.21079046 595187.4474 4673824.099 159:159 376:376 Site.7.16 RIS Rogers Island 998 -73.84689057 42.21033985 595183.2744 4673774 159:159 385:385 Site.7.17 RIS Rogers Island na -73.84682201 42.21035611 595188.9094 4673775.882 159:159 376:385 Site.7.19 RIS Rogers Island 1000 -73.84653602 42.21054613 595212.2313 4673797.3 159:159 376:385 Site.7.20 RIS Rogers Island 1002 -73.84650584 42.21064277 595214.5773 4673808.065 159:159 376:385 Site.7.23 RIS Rogers Island 1003 -73.84626914 42.21077311 595233.9201 4673822.801 159:159 385:391 Site.7.24 RIS Rogers Island 1004 -73.84626277 42.21085911 595234.3167 4673832.357 159:159 385:391 Site.7.28 RIS Rogers Island 713 -73.84603855 42.21117158 595252.3554 4673867.303 159:159 385:391 Site.7.29 RIS Rogers Island 1005 -73.84604082 42.21121416 595252.1041 4673872.028 159:159 376:376 Site.7.30 RIS Rogers Island 1006 -73.84601986 42.21130645 595253.6955 4673882.299 159:159 376:391 Site.8.1 BPT Brandow Point 713 -73.82769358 42.24938518 596708.2815 4678131.03 159:159 376:376 Site.8.4 BPT Brandow Point 1022 -73.82809298 42.24945785 596675.222 4678138.646 159:159 376:391 Site.8.5 BPT Brandow Point 717 -73.82822013 42.24947311 596664.7094 4678140.196 159:159 376:391 Site.8.6 BPT Brandow Point 1030 -73.82854954 42.24942273 596637.6116 4678134.228 159:159 376:391 Site.8.10 BPT Brandow Point 1017 -73.828858 42.24948811 596612.0654 4678141.138 159:159 385:385 Site.8.11 BPT Brandow Point 1018 -73.82891147 42.24953648 596607.5806 4678146.448 159:159 385:385 Site.8.12 BPT Brandow Point 1019 -73.82898859 42.24956196 596601.1797 4678149.19 159:159 376:391 Site.8.16 BPT Brandow Point 1020 -73.82925513 42.24961828 596579.1056 4678155.141 159:159 385:391 Site.8.18 BPT Brandow Point 1021 -73.8290129 42.24970981 596598.9486 4678165.579 159:159 376:376 Site.8.24 BPT Brandow Point 1023 -73.82803154 42.2498399 596679.7069 4678181.137 159:159 376:391 Site.8.26 BPT Brandow Point 1024 -73.82774832 42.2498544 596703.0489 4678183.068 159:159 376:391 Site.8.28 BPT Brandow Point 1025 -73.82750491 42.24978785 596723.2306 4678175.955 159:159 376:391 Site.8.30 BPT Brandow Point 1026 -73.82730533 42.24993839 596739.4648 4678192.897 156:159 391:391 Site.9.1 NYK Nyack 1031 -73.91130986 41.120431 591394.4019 4552697.257 159:159 376:391 Site.9.6 NYK Nyack 1036 -73.91158252 41.12018173 591371.8577 4552669.298 159:159 376:391 Site.9.17 NYK Nyack 1032 -73.91213832 41.11970823 591325.8544 4552616.15 159:159 385:391 Site.9.18 NYK Nyack 1033 -73.91213581 41.11974084 591326.0199 4552619.773 159:159 376:391 Site.9.28 NYK Nyack 1034 -73.9112863 41.12035171 591396.4898 4552688.479 159:159 376:391 Site.10.1 BIS Bear Island 665 -73.75574634 42.55934796 602139.4713 4712633.196 159:159 376:376 Site.10.3 BIS Bear Island 678 -73.75578607 42.55919918 602136.4525 4712616.627 159:159 385:391 Site.10.4 BIS Bear Island 680 -73.75583846 42.55900858 602132.4627 4712595.4 159:159 376:385 Site.10.5 BIS Bear Island 681 -73.75584299 42.55893549 602132.2101 4712587.278 159:159 376:391 Site.10.8 BIS Bear Island 666 -73.75579295 42.55889467 602136.3845 4712582.806 159:159 376:376 Site.10.11 BIS Bear Island 667 -73.75580083 42.55874153 602135.9874 4712565.791 159:159 376:391 Site.10.12 BIS Bear Island 668 -73.75580016 42.55871798 602136.0808 4712563.177 159:159 376:391 Site.10.15 BIS Bear Island 669 -73.75579806 42.55865553 602136.355 4712556.245 159:159 376:391 Site.10.17 BIS Bear Island 670 -73.75578951 42.5585526 602137.2248 4712544.826 159:159 385:391 Site.10.18 BIS Bear Island 671 -73.75578532 42.5584547 602137.7285 4712533.96 159:159 376:391 Site.10.19 BIS Bear Island 672 -73.75577644 42.55842126 602138.512 4712530.257 159:159 376:391 Site.10.21 BIS Bear Island 673 -73.75576118 42.55835169 602139.8782 4712522.551 159:159 376:376 Site.10.22 BIS Bear Island 674 -73.7557502 42.55832436 602140.8241 4712519.529 159:159 376:376 Site.10.25 BIS Bear Island 675 -73.75575506 42.55826821 602140.5168 4712513.288 159:159 376:391 Site.10.27 BIS Bear Island 676 -73.75578373 42.55819118 602138.2888 4712504.7 159:159 376:391 Site.10.29 BIS Bear Island 677 -73.7557911 42.55811415 602137.8095 4712496.138 150:159 376:391 Site.10.30 BIS Bear Island 679 -73.75575305 42.55807978 602140.9891 4712492.367 159:159 385:391 Site.11.1 MEC Mechanicville 682 -73.68377463 42.90460467 607449.8887 4751061.687 159:159 376:376 Site.11.2 MEC Mechanicville 688 -73.68357799 42.90480408 607465.5952 4751084.083 159:159 376:391 Site.11.3 MEC Mechanicville 683 -73.6835769 42.90488698 607465.5401 4751093.29 159:159 385:385 Site.11.5 MEC Mechanicville 691 -73.68363189 42.90499259 607460.8675 4751104.948 159:159 385:385 Site.11.6 MEC Mechanicville 702 -73.68359341 42.90501094 607463.977 4751107.034 156:159 376:391 Site.11.7 MEC Mechanicville 703 -73.68356852 42.90510499 607465.8455 4751117.51 159:159 376:391 Site.11.8 MEC Mechanicville 684 -73.68346324 42.90519652 607474.281 4751127.809 156:159 376:391 Site.11.14 MEC Mechanicville 685 -73.68330776 42.90566457 607486.1604 4751179.984 156:159 376:376 Site.11.17 MEC Mechanicville 686 -73.68320407 42.90600998 607494.0248 4751218.474 156:159 391:391 Site.11.19 MEC Mechanicville 687 -73.68294524 42.90603421 607515.112 4751221.495 159:159 376:391 Site.11.20 MEC Mechanicville 689 -73.68298254 42.90618139 607511.8113 4751237.792 156:159 376:391 Site.11.21 MEC Mechanicville 690 -73.68288958 42.90626446 607519.2555 4751247.135 156:159 376:391 Site.11.25 MEC Mechanicville 692 -73.68261952 42.90660636 607540.7071 4751285.448 156:159 376:391 Site.11.28 MEC Mechanicville 693 -73.68250418 42.90676754 607549.8425 4751303.494 156:159 376:391 Site.13.1 RJN Roe_Jan 706 -73.85286653 42.19020761 594720.0502 4671531.964 156:159 376:376 Site.13.2 RJN Roe_Jan 714 -73.85285312 42.19015254 594721.2397 4671525.864 159:159 385:385 Site.13.3 RJN Roe_Jan 721 -73.85294851 42.19001239 594713.5724 4671510.197 159:159 391:391 Site.13.4 RJN Roe_Jan 723 -73.85286218 42.19000217 594720.7161 4671509.158 156:159 376:376 Site.13.6 RJN Roe_Jan 724 -73.85288808 42.18998163 594718.6082 4671506.849 159:159 376:376 Site.13.7 RJN Roe_Jan 725 -73.8529247 42.18981693 594715.8303 4671488.521 156:159 376:391 Site.13.8 RJN Roe_Jan 726 -73.85299402 42.18975264 594710.2023 4671481.305 159:159 376:376 Site.13.9 RJN Roe_Jan 727 -73.85302579 42.18959967 594707.8074 4671464.285 156:159 376:391 Site.13.10 RJN Roe_Jan 707 -73.853033 42.18954284 594707.2969 4671457.967 156:159 376:376 Site.13.12 RJN Roe_Jan 708 -73.85311087 42.18934813 594701.1576 4671436.261 156:159 376:391 Site.13.14 RJN Roe_Jan 709 -73.85312168 42.18934888 594700.2638 4671436.332 156:159 376:391 Site.13.16 RJN Roe_Jan 710 -73.853162 42.18905711 594697.37 4671403.891 156:159 376:376 Site.13.17 RJN Roe_Jan 711 -73.85303191 42.18912265 594708.0142 4671411.312 156:159 376:376 Site.13.18 RJN Roe_Jan 712 -73.8528698 42.1891675 594721.3332 4671416.472 159:159 376:385 Site.13.19 RJN Roe_Jan 713 -73.85278867 42.18935139 594727.7578 4671436.98 156:159 376:391 Site.13.20 RJN Roe_Jan 715 -73.85280032 42.18946053 594726.6329 4671449.086 156:159 376:376 Site.13.21 RJN Roe_Jan 716 -73.85275656 42.18946866 594730.2341 4671450.037 156:159 376:391 Site.13.22 RJN Roe_Jan 717 -73.85271926 42.18956337 594733.1727 4671460.595 156:159 376:376 Site.13.24 RJN Roe_Jan 718 -73.85268859 42.18976546 594735.4034 4671483.068 156:159 376:376 Site.13.25 RJN Roe_Jan 719 -73.85264659 42.18988884 594738.6872 4671496.814 159:159 385:391 Site.13.26 RJN Roe_Jan 720 -73.85260502 42.19014633 594741.7352 4671525.45 159:159 385:391 Site.13.30 RJN Roe_Jan 722 -73.85568956 42.18585983 594493.4223 4671046.079 159:159 385:391 Site.14.1 GRP Greenport 728 -73.78667012 42.2671653 600064.4019 4680152.647 159:159 376:385 Site.14.2 GRP Greenport 734 -73.78673047 42.26713303 600059.4757 4680148.993 159:159 385:385 Site.14.3 GRP Greenport 737 -73.78673801 42.26713277 600058.8543 4680148.955 159:159 376:385 Site.14.5 GRP Greenport 729 -73.78641271 42.26726395 600085.475 4680163.903 159:159 376:385 Site.14.13 GRP Greenport 730 -73.78538308 42.26743838 600170.1144 4680184.481 159:159 385:391 Site.14.16 GRP Greenport 731 -73.78497186 42.26765262 600203.6891 4680208.754 159:159 385:391 Site.14.17 GRP Greenport 732 -73.78509424 42.26774591 600193.4484 4680218.968 159:159 376:391 Site.14.19 GRP Greenport 733 -73.78527721 42.26765815 600178.4976 4680209.008 159:159 376:391 Site.14.20 GRP Greenport 735 -73.78531653 42.26757651 600175.3841 4680199.897 159:159 376:376 Site.14.24 GRP Greenport 736 -73.78556756 42.26751583 600154.7774 4680192.864 159:159 376:385 Site.14.30 GRP Greenport 738 -73.78634197 42.26744835 600091.0173 4680184.461 159:159 376:385 Site.15.1 ANT Antiona 739 -73.96042781 41.30198403 587029.9767 4572802.18 159:159 376:385 Site.15.2 ANT Antiona 740 -73.96043351 41.30203407 587029.433 4572807.73 159:159 385:391 Site.15.3 ANT Antiona 749 -73.96044608 41.30200717 587028.4164 4572804.731 159:159 376:376 Site.15.4 ANT Antiona 753 -73.96046494 41.30194472 587026.9206 4572797.779 159:159 376:376 Site.15.5 ANT Antiona 754 -73.96049738 41.30203935 587024.0789 4572808.252 159:159 376:391 Site.15.14 ANT Antiona 741 -73.96092041 41.30213046 586988.5425 4572817.943 159:159 376:391 Site.15.15 ANT Antiona 742 -73.96098026 41.30221789 586983.4158 4572827.589 159:159 376:391 Site.15.16 ANT Antiona 743 -73.9611992 41.30219777 586965.1133 4572825.136 159:162 376:385 Site.15.17 ANT Antiona 744 -73.96120791 41.30217246 586964.4177 4572822.318 159:159 376:391 Site.15.18 ANT Antiona 745 -73.96130984 41.30212678 586955.945 4572817.144 159:159 376:391 Site.15.19 ANT Antiona 746 -73.96136197 41.3020764 586951.6477 4572811.499 159:159 376:391 Site.15.20 ANT Antiona 747 -73.96140916 41.30208864 586947.6808 4572812.81 159:159 376:391 Site.15.29 ANT Antiona 748 -73.96143758 41.30229953 586945.0214 4572836.195 159:159 385:391 Site.15.30 ANT Antiona 750 -73.96150606 41.30232459 586939.2551 4572838.908 159:159 385:391 Site.15.32 ANT Antiona 751 -73.96184946 41.30227807 586910.5682 4572833.4 159:159 376:376 Site.15.33 ANT Antiona 752 -73.96193136 41.30215871 586903.8702 4572820.067 159:159 376:376 Site.16.1 ACR Annsville Creek 756 -73.93801292 41.29489219 588916.1466 4572037.578 159:159 376:385 Site.16.2 ACR Annsville Creek 765 -73.93800789 41.29494491 588916.4961 4572043.436 159:159 376:385 Site.16.3 ACR Annsville Creek 774 -73.93805961 41.29505211 588912.0202 4572055.284 159:159 376:385 Site.16.5 ACR Annsville Creek 776 -73.9377245 41.29545461 588939.5312 4572100.312 159:159 376:385 Site.16.6 ACR Annsville Creek 1 -73.93871776 41.29566232 588856.0869 4572122.354 159:159 376:385 Site.16.7 ACR Annsville Creek 777 -73.93858524 41.29571831 588867.1063 4572128.706 159:159 376:385 Site.16.8 ACR Annsville Creek 778 -73.93839941 41.29575343 588882.6175 4572132.795 159:159 376:385 Site.16.10 ACR Annsville Creek 757 -73.93823521 41.29567732 588896.4687 4572124.513 159:159 376:385 Site.16.12 ACR Annsville Creek 758 -73.93807034 41.29570993 588910.2284 4572128.302 159:159 376:385 Site.16.13 ACR Annsville Creek 759 -73.93871038 41.29620488 588855.9684 4572182.595 159:159 376:385 Site.16.14 ACR Annsville Creek 760 -73.93854476 41.29618141 588869.8669 4572180.159 159:159 376:391 Site.16.15 ACR Annsville Creek 761 -73.93848633 41.29618409 588874.7554 4572180.517 159:159 376:385 Site.16.16 ACR Annsville Creek 762 -73.93840193 41.29621929 588881.774 4572184.511 159:159 376:385 Site.16.18 ACR Annsville Creek 763 -73.93839564 41.29658315 588881.8067 4572224.912 159:159 376:385 Site.16.19 ACR Annsville Creek 764 -73.93832901 41.29658223 588887.3865 4572224.878 159:159 376:385 Site.16.20 ACR Annsville Creek 766 -73.93812985 41.29661936 588904.0109 4572229.204 159:159 376:385 Site.16.21 ACR Annsville Creek 767 -73.93801116 41.29656387 588914.0236 4572223.166 159:159 376:385 Site.16.24 ACR Annsville Creek 768 -73.93764211 41.29654745 588944.9447 4572221.721 159:159 376:385 Site.16.25 ACR Annsville Creek 769 -73.93790186 41.29693762 588922.6671 4572264.77 159:159 385:391 Site.16.26 ACR Annsville Creek 770 -73.93780623 41.29699579 588930.5947 4572271.326 159:159 376:385 Site.16.27 ACR Annsville Creek 771 -73.93758419 41.29685481 588949.3765 4572255.902 159:159 376:385 Site.16.28 ACR Annsville Creek 772 -73.93730524 41.29695958 588972.5891 4572267.82 159:159 376:391 Site.16.29 ACR Annsville Creek 773 -73.93685815 41.29666119 589010.4274 4572235.151 159:159 376:376 Site.16.30 ACR Annsville Creek 775 -73.93657023 41.2965047 589034.7464 4572218.074 159:159 376:376 Site.17.1 MAL Malden 779 -73.92751777 42.11094424 588666.5081 4662650.858 159:159 376:385 Site.17.2 MAL Malden 790 -73.9276316 42.11101407 588656.9999 4662658.494 153:159 376:385 Site.17.4 MAL Malden 808 -73.9278051 42.11099026 588642.689 4662655.67 159:159 376:391 Site.17.7 MAL Malden 816 -73.92818078 42.11076521 588611.9431 4662630.292 159:159 376:385 Site.17.8 MAL Malden 780 -73.92829033 42.11072288 588602.945 4662625.479 159:159 376:385 Site.17.11 MAL Malden 781 -73.92878411 42.11065951 588562.2097 4662617.93 159:159 376:391 Site.17.12 MAL Malden 782 -73.92865117 42.11056756 588573.3287 4662607.859 159:159 385:391 Site.17.13 MAL Malden 783 -73.92832637 42.11049891 588600.2773 4662600.573 159:159 385:391 Site.17.14 MAL Malden 784 -73.92824675 42.11044586 588606.9338 4662594.765 159:159 385:391 Site.17.15 MAL Malden 785 -73.92806796 42.1104016 588621.7771 4662590.037 159:159 391:391 Site.17.16 MAL Malden 786 -73.92796587 42.11046865 588630.124 4662597.587 153:159 391:391 Site.17.17 MAL Malden 787 -73.92788473 42.11051048 588636.7741 4662602.316 159:159 391:391 Site.17.18 MAL Malden 788 -73.92771181 42.11038584 588651.244 4662588.656 159:162 376:391 Site.17.19 MAL Malden 789 -73.92791994 42.11023706 588634.244 4662571.921 159:162 376:391 Site.17.20 MAL Malden 791 -73.92815027 42.11003741 588615.4794 4662549.514 159:162 376:391 Site.17.21 MAL Malden 792 -73.92826552 42.10995702 588606.0629 4662540.469 159:162 376:391 Site.17.22 MAL Malden 793 -73.92833601 42.10996624 588600.2222 4662541.419 159:159 385:391 Site.17.23 MAL Malden 794 -73.92836518 42.10999541 588597.7699 4662544.628 159:159 376:376 Site.17.24 MAL Malden 795 -73.9285117 42.11007982 588585.5386 4662553.848 159:159 385:391 Site.17.25 MAL Malden 796 -73.92841371 42.11019356 588593.4817 4662566.579 159:159 376:391 Site.17.26 MAL Malden 797 -73.92857238 42.10995987 588580.6888 4662540.467 159:159 391:391 Site.17.27 MAL Malden 798 -73.92857205 42.10951647 588581.3335 4662491.235 159:159 391:391 Site.17.28 MAL Malden 799 -73.92857448 42.10963927 588580.9616 4662504.868 159:159 391:391 Site.17.29 MAL Malden 800 -73.92856878 42.10970221 588581.3453 4662511.862 159:159 391:391 Site.17.30 MAL Malden 801 -73.92851514 42.10982987 588585.6023 4662526.092 159:159 376:391 Site.17.31 MAL Malden 802 -73.92364743 42.11716655 588977.7841 4663345.765 159:159 391:391 Site.17.32 MAL Malden 803 -73.9233031 42.11802821 589005.043 4663441.796 159:159 376:391 Site.17.33 CEM Cementon 804 -73.92172471 42.12202285 589129.923 4663886.98 159:159 391:391 Site.17.35 CEM Cementon 805 -73.92153108 42.12209242 589145.8311 4663894.906 159:159 391:391 Site.17.36 CEM Cementon 806 -73.92165656 42.12210977 589135.4345 4663896.702 159:159 391:391 Site.17.37 CEM Cementon 717 -73.92097503 42.1228799 589190.6899 4663982.923 159:159 391:391 Site.17.39 CEM Cementon 807 -73.91985613 42.12362774 589282.1277 4664067.127 159:159 391:391 Site.17.40 CEM Cementon 713 -73.91986409 42.12365934 589281.4254 4664070.628 159:159 391:391 Site.17.41 CEM Cementon 809 -73.91985479 42.12370343 589282.1322 4664075.533 159:159 391:391 Site.17.44 CEM Cementon 810 -73.91920477 42.12711234 589331.0722 4664454.715 153:159 391:391 Site.17.46 CEM Cementon 811 -73.91875919 42.12731728 589367.6131 4664477.937 159:159 391:391 Site.17.48 CEM Cementon 812 -73.91881359 42.12713171 589363.3776 4664457.275 159:159 391:391 Site.17.53 CEM Cementon 813 -73.9184188 42.12753379 589395.4432 4664502.333 159:159 391:391 Site.17.56 CEM Cementon 814 -73.91827161 42.1278461 589407.1698 4664537.164 159:159 376:391 Site.17.60 CEM Cementon 815 -73.91813767 42.12779815 589418.3078 4664531.98 159:159 376:391 Site.18.1 TCR Tivoli North Bay - Creek 817 -73.91521867 42.03914249 589784.4951 4654691.377 159:159 376:391 Site.18.2 TCR Tivoli North Bay - Creek 717 -73.91536133 42.03914585 589772.6827 4654691.601 159:159 376:391 Site.18.4 TCR Tivoli North Bay - Creek 713 -73.91648912 42.03907913 589679.4311 4654683.01 159:159 391:391 Site.18.5 TCR Tivoli North Bay - Creek 841 -73.91665743 42.03937157 589665.0892 4654715.303 159:159 391:391 Site.18.7 TCR Tivoli North Bay - Creek 820 -73.91618226 42.03968924 589703.9713 4654751.073 159:159 376:391 Site.18.9 TCR Tivoli North Bay - Creek 843 -73.9158847 42.03990877 589728.2907 4654775.76 159:159 376:391 Site.18.10 TCR Tivoli North Bay - Creek 818 -73.91583525 42.04012544 589732.0787 4654799.869 159:159 385:391 Site.18.11 TCR Tivoli North Bay - Creek 819 -73.91584983 42.04048343 589730.3683 4654839.602 159:159 385:391 Site.18.14 TCR Tivoli North Bay - Creek 821 -73.91594991 42.04078727 589721.6575 4654873.233 159:159 376:391 Site.18.15 TCR Tivoli North Bay - Creek 822 -73.91600783 42.04100043 589716.5638 4654896.84 159:159 391:391 Site.18.16 TCR Tivoli North Bay - Creek 823 -73.91595762 42.04109824 589720.5818 4654907.752 159:159 391:391 Site.18.17 TCR Tivoli North Bay - Creek 824 -73.91613674 42.04140309 589705.328 4654941.412 159:159 376:391 Site.18.20 TCR Tivoli North Bay - Creek 825 -73.91648107 42.04186435 589676.1807 4654992.266 159:159 376:391 Site.18.22 TCR Tivoli North Bay - Creek 826 -73.9169948 42.04243071 589632.8658 4655054.611 159:159 391:391 Site.18.23 TCR Tivoli North Bay - Creek 827 -73.91701383 42.04242317 589631.3014 4655053.754 153:159 376:391 Site.18.24 TCR Tivoli North Bay - Creek 828 -73.91712346 42.04243214 589622.2153 4655054.635 159:159 376:391 Site.18.26 TCR Tivoli North Bay - Creek 829 -73.91739093 42.04314066 589599.0828 4655133.024 159:162 376:385 Site.18.27 TCR Tivoli North Bay - Creek 830 -73.92058108 42.04400098 589333.8505 4655225.21 159:159 376:385 Site.18.31 TCR Tivoli North Bay - Creek 831 -73.92279675 42.04430524 589150.0516 4655256.681 159:159 376:385 Site.18.32 TCR Tivoli North Bay - Creek 779 -73.92284654 42.0444334 589145.7517 4655270.859 159:159 376:385 Site.18.33 TCR Tivoli North Bay - Creek 832 -73.92285861 42.04448436 589144.6816 4655276.505 159:159 376:376 Site.18.35 TCR Tivoli North Bay - Creek 833 -73.92292625 42.04466902 589138.8254 4655296.937 159:162 376:376 Site.18.36 TCR Tivoli North Bay - Creek 834 -73.92289046 42.04478536 589141.6248 4655309.892 159:159 376:385 Site.18.40 TCR Tivoli North Bay - Creek 835 -73.92248268 42.04514695 589174.8674 4655350.465 159:159 385:385 Site.18.42 TCR Tivoli North Bay - Creek 836 -73.92246969 42.04521644 589175.8452 4655358.194 159:162 376:385 Site.18.44 TCR Tivoli North Bay - Creek 837 -73.92257991 42.04543144 589166.4227 4655381.951 159:159 385:385 Site.18.45 TCR Tivoli North Bay - Creek 838 -73.92261269 42.04552221 589163.5829 4655391.995 159:159 385:385 Site.18.47 TCR Tivoli North Bay - Creek 839 -73.9228566 42.04582798 589142.9694 4655425.691 159:159 376:376 Site.18.48 TCR Tivoli North Bay - Creek 840 -73.92296447 42.04597584 589133.8354 4655441.996 159:159 376:385 Site.18.53 TCR Tivoli North Bay - Creek 842 -73.92405722 42.0461035 589043.2216 4655455.032 159:159 376:385 Site.19.1 STP Stony Point 844 -73.97340844 41.22748308 586041.0099 4564518.377 159:159 376:385 Site.19.2 STP Stony Point 853 -73.97335321 41.22756187 586045.5356 4564527.179 159:159 376:385 Site.19.3 STP Stony Point 860 -73.97339595 41.22770813 586041.7617 4564543.374 159:159 376:385 Site.19.4 STP Stony Point 852 -73.97337156 41.22776236 586043.7348 4564549.419 159:162 376:376 Site.19.9 STP Stony Point 862 -73.97347298 41.22809563 586034.7975 4564586.317 159:159 376:391 Site.19.10 STP Stony Point 845 -73.97347743 41.22814751 586034.3566 4564592.072 159:159 376:385 Site.19.11 STP Stony Point 846 -73.97341054 41.22821985 586039.8679 4564600.169 159:162 376:385 Site.19.12 STP Stony Point 847 -73.97339076 41.22826193 586041.4706 4564604.86 159:159 385:385 Site.19.13 STP Stony Point 848 -73.97337953 41.2283097 586042.3492 4564610.174 159:159 376:376 Site.19.14 STP Stony Point 849 -73.97344004 41.2284149 586037.1397 4564621.793 159:159 376:385 Site.19.15 STP Stony Point 850 -73.97345966 41.22843644 586035.4671 4564624.165 159:159 376:385 Site.19.16 STP Stony Point 851 -73.97350031 41.22850877 586031.9653 4564632.155 159:159 376:385 Site.19.20 STP Stony Point 854 -73.97338263 41.2281429 586042.308 4564591.654 159:159 376:376 Site.19.22 STP Stony Point 855 -73.97304676 41.22789153 586070.7879 4564564.08 159:159 376:376 Site.19.27 STP Stony Point 857 -73.97312346 41.22809554 586064.0919 4564586.653 156:159 376:385 Site.19.28 STP Stony Point 858 -73.97313695 41.22814659 586062.8943 4564592.307 159:162 376:376 Site.19.29 STP Stony Point 859 -73.9729062 41.22795934 586082.4797 4564571.747 159:159 376:391 Site.19.31 STP Stony Point 861 -73.97292439 41.22801399 586080.8834 4564577.796 159:159 376:391 Site.20.1 STW Stillwater 691 -73.60920788 42.99421342 613372.6096 4761110.629 159:159 376:391 Site.20.5 STW Stillwater 872 -73.60917686 42.99445683 613374.6907 4761137.702 159:159 376:391 Site.20.7 STW Stillwater 873 -73.60918005 42.99468767 613374.0062 4761163.332 159:159 376:391 Site.20.8 STW Stillwater 874 -73.60916572 42.99474098 613375.0763 4761169.272 159:159 376:391 Site.20.10 STW Stillwater 868 -73.60913487 42.99488012 613377.3353 4761184.765 159:159 376:391 Site.20.11 STW Stillwater 869 -73.60914845 42.99491247 613376.1688 4761188.339 159:159 376:391 Site.20.23 STW Stillwater 870 -73.60910009 42.99566215 613378.7325 4761271.657 159:159 376:391 Site.20.27 STW Stillwater 871 -73.60905935 42.99582291 613381.7578 4761289.564 159:159 376:391 Site.21.2 RCC Roundout Creek Cove 885 -73.970498 41.91676344 585372.4321 4641047.052 159:159 376:391 Site.21.3 RCC Roundout Creek Cove 896 -73.97056958 41.91675011 585366.514 4641045.501 146:159 391:391 Site.21.4 RCC Roundout Creek Cove 901 -73.9706347 41.91666914 585361.2217 4641036.446 159:159 376:391 Site.21.6 RCC Roundout Creek Cove 902 -73.9707057 41.91660133 585355.4243 4641028.847 159:159 376:391 Site.21.7 RCC Roundout Creek Cove 903 -73.9707311 41.91660108 585353.3182 4641028.794 159:159 376:391 Site.21.8 RCC Roundout Creek Cove 904 -73.97078902 41.91655037 585348.5827 4641023.106 159:159 376:391 Site.21.9 RCC Roundout Creek Cove 905 -73.97074979 41.91653151 585351.861 4641021.051 159:159 376:391 Site.21.10 RCC Roundout Creek Cove 876 -73.9704524 41.91688975 585376.0452 4641061.122 159:159 376:391 Site.21.12 RCC Roundout Creek Cove 877 -73.97089555 41.9164715 585339.8535 4641014.243 159:159 376:391 Site.21.13 RCC Roundout Creek Cove 878 -73.97102036 41.91634309 585329.6744 4640999.861 159:159 376:391 Site.21.14 RCC Roundout Creek Cove 879 -73.97171832 41.91572148 585272.6219 4640930.15 159:159 376:391 Site.21.15 RCC Roundout Creek Cove 880 -73.97229281 41.91603245 585224.5667 4640964.106 159:159 376:391 Site.21.16 RCC Roundout Creek Cove 881 -73.97226674 41.91612675 585226.6032 4640974.602 159:159 376:391 Site.21.17 RCC Roundout Creek Cove 882 -73.97227881 41.91612348 585225.6066 4640974.227 159:159 376:391 Site.21.18 RCC Roundout Creek Cove 883 -73.97233229 41.91658457 585220.5581 4641025.368 159:159 376:391 Site.21.19 RCC Roundout Creek Cove 884 -73.97242416 41.91675514 585212.7127 4641044.215 159:159 391:391 Site.21.20 RCC Roundout Creek Cove 886 -73.97264762 41.91554228 585195.795 4640909.33 159:159 376:391 Site.21.21 RCC Roundout Creek Cove 887 -73.97267679 41.91534438 585193.6392 4640887.328 159:159 376:391 Site.21.22 RCC Roundout Creek Cove 888 -73.97304936 41.91532292 585162.771 4640884.576 159:159 376:376 Site.21.23 RCC Roundout Creek Cove 889 -73.97278173 41.91520231 585185.1256 4640871.45 159:159 376:391 Site.21.24 RCC Roundout Creek Cove 890 -73.97275675 41.91519074 585187.2126 4640870.191 159:159 376:391 Site.21.25 RCC Roundout Creek Cove 891 -73.97287066 41.91515059 585177.8195 4640865.62 159:159 376:391 Site.21.26 RCC Roundout Creek Cove 892 -73.97291383 41.91509988 585174.3069 4640859.946 159:159 376:391 Site.21.27 RCC Roundout Creek Cove 893 -73.97290478 41.91505328 585175.1194 4640854.781 159:159 376:391 Site.21.28 RCC Roundout Creek Cove 894 -73.97271601 41.915048 585190.7809 4640854.383 159:159 376:391 Site.21.29 RCC Roundout Creek Cove 895 -73.97275222 41.91490752 585187.9649 4640838.749 159:159 376:391 Site.21.30 RCC Roundout Creek Cove 897 -73.97279388 41.91490131 585184.5183 4640838.018 159:159 376:391 Site.21.31 RCC Roundout Creek Cove 898 -73.97257947 41.91476184 585202.4847 4640822.746 159:159 376:391 Site.21.32 RCC Roundout Creek Cove 899 -73.97248107 41.91460786 585210.8498 4640805.748 159:159 376:391 Site.21.33 RCC Roundout Creek Cove 900 -73.97228703 41.91444442 585227.159 4640787.794 159:159 376:391 Site.22.1 RCR Rondout Creek 906 -73.96952561 41.92151723 585446.7268 4641575.831 159:159 376:391 Site.22.2 RCR Rondout Creek 917 -73.96951614 41.92148865 585447.5502 4641572.667 159:159 376:376 Site.22.4 RCR Rondout Creek 919 -73.96961664 41.92150273 585439.1979 4641574.13 159:159 376:391 Site.22.5 RCR Rondout Creek 920 -73.97088708 41.92131766 585334.0986 4641552.317 159:159 376:391 Site.22.6 RCR Rondout Creek 921 -73.97090225 41.92123242 585332.9543 4641542.837 159:159 376:391 Site.22.9 RCR Rondout Creek 922 -73.97126117 41.92081751 585303.7449 4641496.413 159:159 376:391 Site.22.10 RCR Rondout Creek 907 -73.97115405 41.92075758 585312.7073 4641489.866 159:159 376:391 Site.22.12 RCR Rondout Creek 909 -73.97119956 41.92068843 585309.0257 4641482.143 159:159 376:391 Site.22.13 RCR Rondout Creek 910 -73.97123887 41.9207207 585305.723 4641485.687 159:159 376:391 Site.22.14 RCR Rondout Creek 911 -73.97171522 41.92079782 585266.1206 4641493.775 159:159 376:391 Site.22.15 RCR Rondout Creek 912 -73.971793 41.92079471 585259.675 4641493.353 159:159 376:391 Site.22.16 RCR Rondout Creek 913 -73.97181094 41.92082288 585258.1499 4641496.463 159:159 376:391 Site.22.17 RCR Rondout Creek 914 -73.97210657 41.92094492 585233.4734 4641509.719 159:159 391:391 Site.22.18 RCR Rondout Creek 915 -73.97422316 41.92039842 585058.6884 4641446.939 159:159 391:391 Site.22.19 RCR Rondout Creek 916 -73.97448359 41.92038635 585037.109 4641445.341 159:159 376:391 Site.22.20 RCR Rondout Creek 918 -73.97456221 41.92036388 585030.6195 4641442.768 159:159 376:391 Site.24.1 NHK Nutten Hooke/Stockport North 926 -73.78755801 42.35271502 599855.8449 4689650.81 159:159 391:400 Site.24.2 NHK Nutten Hooke/Stockport North 933 -73.78553269 42.34831025 600029.6362 4689164.093 159:159 391:391 Site.24.4 SPN Nutten Hooke/Stockport North 942 -73.77894058 42.32650431 600607.3617 4686750.585 159:159 391:391 Site.24.5 SPN Nutten Hooke/Stockport North 863 -73.7789348 42.32650297 600607.8401 4686750.443 159:159 376:391 Site.24.7 SPN Nutten Hooke/Stockport North 945 -73.77884176 42.32610114 600616.1465 4686705.935 159:159 376:391 Site.24.8 SPN Nutten Hooke/Stockport North 933 -73.77909162 42.32433926 600598.3666 4686510.004 159:159 376:391 Site.24.9 SPN Nutten Hooke/Stockport North 929 -73.77891518 42.32433507 600612.9115 4686509.748 156:159 376:391 Site.24.10 SPN Nutten Hooke/Stockport North 927 -73.77503704 42.32235929 600935.6193 4686294.955 159:159 391:391 Site.24.11 SPN Nutten Hooke/Stockport North 732 -73.77503428 42.32234756 600935.8654 4686293.656 159:159 376:391 Site.24.13 SPN Nutten Hooke/Stockport North 928 -73.77778966 42.32072784 600711.4053 4686110.541 159:159 376:391 Site.24.15 SPN Nutten Hooke/Stockport North 930 -73.7776962 42.32063119 600719.2607 4686099.92 159:159 376:376 Site.24.16 SPN Nutten Hooke/Stockport North 931 -73.77761833 42.32059875 600725.7292 4686096.41 159:159 376:376 Site.24.17 SPN Nutten Hooke/Stockport North 932 -73.77764289 42.32054276 600723.7947 4686090.164 153:159 376:391 Site.24.22 SPN Nutten Hooke/Stockport North na -73.77735975 42.32024814 600747.5962 4686057.786 159:159 391:391 Site.24.29 SPN Nutten Hooke/Stockport North 937 -73.77700017 42.31974657 600778.0271 4686002.519 159:159 391:394 Site.24.30 SPN Nutten Hooke/Stockport North 728 -73.77693596 42.31970952 600783.3774 4685998.481 159:159 391:391 Site.24.32 SPN Nutten Hooke/Stockport North 938 -73.77679565 42.31951707 600795.2466 4685977.278 153:159 376:391 Site.24.35 NHK Nutten Hooke/Stockport North 939 -73.7825997 42.34383104 600278.335 4688670.185 153:159 376:391 Site.24.38 NHK Nutten Hooke/Stockport North 940 -73.78251429 42.34385694 600285.3292 4688673.162 159:159 376:391 Site.24.39 NHK Nutten Hooke/Stockport North 941 -73.7823956 42.34400966 600294.8632 4688690.259 159:159 391:391 Site.24.40 NHK Nutten Hooke/Stockport North 943 -73.78237657 42.34414629 600296.2135 4688705.453 159:159 376:391 Site.24.41 NHK Nutten Hooke/Stockport North 944 -73.78229694 42.34422768 600302.6434 4688714.584 162:162 376:376 Site.24.45 SPN Stockport North 729 -73.77370872 42.333026 601028.0007 4687480.938 159:159 391:391 NY_Site.N.1 N Site.N 1045 -73.5859 43.3006 614698.2005 4795167.626 159:159 376:376

neellab-umd commented 8 years ago

Thank you so much! It works perfectly when I use check.duplicates=FALSE!

Maile Neel Associate Professor; Director of the Norton-Brown Herbarium University of Maryland Department of Plant Science and Landscape Architecture & Department of Entomology

Office Phone (301) 405-9780 Cellular Phone (301) 395-0403

Lab Website: http://alyxia.umd.edu Herbarium Website: http://nbh.psla.umd.edu

On Thu, Oct 27, 2016 at 10:47 AM, Thibaut Jombart notifications@github.com wrote:

Closed #157 https://github.com/thibautjombart/adegenet/issues/157.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/thibautjombart/adegenet/issues/157#event-838714967, or mute the thread https://github.com/notifications/unsubscribe-auth/ATQmr8yNfdcjkoxsykNS8PXLz-HwqGDHks5q4LlpgaJpZM4Ken99 .