search

thibautjombart / adegenet

adegenet: a R package for the multivariate analysis of genetic markers
169 stars 64 forks source link

"entirely non-type individual(s) deleted" warning is unclear #274

Closed plantarum closed 4 years ago

plantarum commented 4 years ago

Hi,

I just got this warning message when using df2genind:

entirely non-type individual(s) deleted

It took me a while to figure out; I think it means that I have some individuals with no scored loci, and they have been dropped. That's correct, and I'm happy to get a warning when this happens. However, the wording is not clear, particularly the phrase "non-type individual".

If I have interpreted the warning correctly, perhaps you might consider rewording it as:

Individuals with no scored loci have been removed

Or something similar?

Thanks,

Tyler

zkamvar commented 4 years ago

I think that's a good idea. I'll try to make this change soon, but do poke me if you don't hear anything about it in a while.

plantarum commented 4 years ago

Great, thanks!

poecile-palustris commented 1 year ago

Good evening!

Could you please tell me is there a way to disable ignoring such samples? Thank you in advance!

Best regards, Poecile

zkamvar commented 1 year ago

At the moment, ther is no way to disable this. Individuals that have no genotypes cannot be analyzed