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thibautjombart / outbreaker

Disease outbreak reconstruction from epidemiological and genetic data
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Error in checkForRemoteErrors(val) #5

Closed tothuhien closed 7 years ago

tothuhien commented 7 years ago

Hi, I'm trying to run outbreaker.parallel on just 14 sequences, 4 runs and 1e6 iterations, but I've always got the error: Error in checkForRemoteErrors(val) : 4 nodes produced errors; first error: line 2001 did not have 51 elements Do you know what goes wrong here? Thank you very much Hien

thibautjombart commented 7 years ago

Hi Hien, the error suggests that it is not a parallel-version problem. Can you try the serial version and see what error messages are? Also, which version of R and outbreaker are you using?

tothuhien commented 7 years ago

Hi Thibaut. The serial version works, and after finishing the serial version I tried the parallel version again and it worked this time without errors. I don't know why, but I think it was because the last time when I run the parallel-version, I've stopped it when it hadn't finished yet. That may cause the problem. Thanks a lot.

thibautjombart commented 7 years ago

OK great, thanks for the update! Best Thibaut

-- Dr Thibaut Jombart Lecturer, Department of Infectious Disease Epidemiology, Imperial College London Head of RECON: repidemicsconsortium.org sites.google.com/site/thibautjombart/ github.com/thibautjombart Twitter: @TeebzR http://twitter.com/TeebzR +44(0)20 7594 3658

On 26 January 2017 at 23:59, tothuhien notifications@github.com wrote:

Closed #5 https://github.com/thibautjombart/outbreaker/issues/5.

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