./submitBulkTissue error

[dq09]

appreciate your help with this one

init: handler close of file: terminate called after throwing an instance of 'H5::LocationException' [dq09-VirtualBox:22690] Process received signal [dq09-VirtualBox:22690] Signal: Aborted (6) [dq09-VirtualBox:22690] Signal code: (-6) [dq09-VirtualBox:22690] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x3ef20)[0x7f8fdc620f20] [dq09-VirtualBox:22690] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0xc7)[0x7f8fdc620e97] [dq09-VirtualBox:22690] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x141)[0x7f8fdc622801] [dq09-VirtualBox:22690] [ 3] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0x8c8b7)[0x7f8fcf3a18b7] [dq09-VirtualBox:22690] [ 4] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0x92a06)[0x7f8fcf3a7a06] [dq09-VirtualBox:22690] [ 5] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0x91a69)[0x7f8fcf3a6a69] [dq09-VirtualBox:22690] [ 6] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(gxx_personality_v0+0x2e8)[0x7f8fcf3a7418] [dq09-VirtualBox:22690] [ 7] /lib/x86_64-linux-gnu/libgcc_s.so.1(+0x10553)[0x7f8fd8b3f553] [dq09-VirtualBox:22690] [ 8] /lib/x86_64-linux-gnu/libgcc_s.so.1(_Unwind_RaiseException+0x2b1)[0x7f8fd8b3fab1] [dq09-VirtualBox:22690] [ 9] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(__cxa_throw+0x37)[0x7f8fcf3a7c67] [dq09-VirtualBox:22690] [10] /usr/lib/x86_64-linux-gnu/libhdf5_cpp.so.100(_ZNK2H510H5Location5flushE11H5F_scopet+0xd0)[0x7f8fc6aafc00] [dq09-VirtualBox:22690] [11] /tumorcode/build/py/krebsutils/../../lib/libtumors.so(_Z7handleri+0x87)[0x7f8fc228f6f7] [dq09-VirtualBox:22690] [12] /lib/x8664-linux-gnu/libc.so.6(+0x3ef20)[0x7f8fdc620f20] [dq09-VirtualBox:22690] [13] /tumorcode/build/py/krebsutils/../../lib/libtumors.so(Z27ComputeCirculatedComponentsP12VesselList3d+0x9b)[0x7f8fc2396e5b] [dq09-VirtualBox:22690] [14] /tumorcode/build/py/krebsutils/../../lib/libtumors.so(Z8CalcFlowR12VesselList3dRK19BloodFlowParameters+0x32)[0x7f8fc22a7622] [dq09-VirtualBox:22690] [15] /tumorcode/build/py/krebsutils/../../lib/libtumors.so(_ZN10BulkTissue11NewTumorSim3runERKN5boost13property_tree11basic_ptreeINSt7cxx1112basic_stringIcSt11char_traitsIcESaIcEEES9_St4lessIS9EEE+0x1105)[0x7f8fc22867c5] [dq09-VirtualBox:22690] [16] /tumorcode/build/py/krebsutils/../../lib/libtumors.so(_ZN6Tumors27run_bulktissue_withvesselsERKN5boost6python3strE+0xeb2)[0x7f8fc228ed12] [dq09-VirtualBox:22690] [17] /tumorcode/build/py/krebsutils/../../lib/libtumors.so(_ZN5boost6python7objects23caller_py_function_implINS0_6detail6callerIPFvRKNS0_3strEENS0_21default_call_policiesENS_3mpl7vector2IvS7_EEEEEclEP7objectSH+0x3a)[0x7f8fc229143a] [dq09-VirtualBox:22690] [18] /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.65.1(_ZNK5boost6python7objects8function4callEP7objectS4+0x285)[0x7f8fc8cb4e55] [dq09-VirtualBox:22690] [19] /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.65.1(+0x22008)[0x7f8fc8cb5008] [dq09-VirtualBox:22690] [20] /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.65.1(_ZN5boost6python21handle_exception_implENS_9function0IvEE+0x73)[0x7f8fc8cbb9a3] [dq09-VirtualBox:22690] [21] /usr/lib/x86_64-linux-gnu/libboost_python-py27.so.1.65.1(+0x1f6c9)[0x7f8fc8cb26c9] [dq09-VirtualBox:22690] [22] python2(PyEval_EvalFrameEx+0x54b0)[0x561fa05bcf60] [dq09-VirtualBox:22690] [23] python2(PyEval_EvalCodeEx+0x6da)[0x561fa05b58ca] [dq09-VirtualBox:22690] [24] python2(+0x10e44c)[0x561fa05d144c] [dq09-VirtualBox:22690] [25] python2(PyObject_Call+0x3e)[0x561fa05a133e] [dq09-VirtualBox:22690] [26] python2(PyEval_EvalFrameEx+0x2ccb)[0x561fa05ba77b] [dq09-VirtualBox:22690] [27] python2(PyEval_EvalCodeEx+0x6da)[0x561fa05b58ca] [dq09-VirtualBox:22690] [28] python2(PyEval_EvalCode+0x19)[0x561fa05b51e9] [dq09-VirtualBox:22690] [29] python2(+0x122bdf)[0x561fa05e5bdf] [dq09-VirtualBox:22690] End of error message

[thierry3000]

Excellent. I hope this one is as easy as it seems to be... check the latest commit

[dq09]

nice one!