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thierrygosselin / assigner

Population assignment analysis using R
http://thierrygosselin.github.io/assigner
GNU General Public License v3.0
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Reading VCF... Error in SeqArray::seqOpen(gds.fn = data.safe$result, readonly = FALSE) : is.character(gds.fn) is not TRUE #26

Closed saat-mics closed 1 year ago

saat-mics commented 1 year ago

Hi, when using assigner mf<-radiator::genomic_converter(data="/gpfs/gpfs0/genomdata/Ecogenome/periwinkle/stacks/populations/s1_50%_50%_217ind_fullfiltered.recode.vcf", strata="/gpfs/gpfs0/genomdata/Ecogenome/periwinkle/stacks/populations/s1_pop") %>%dplyr::glimpse()

I get the following error:

################################################################################ ######################### radiator::genomic_converter ########################## ################################################################################ Execution date@time: 20230223@1627 Folder created: -277260_radiator_genomic_converter_20230223@1627 Function call and arguments stored in: radiator_genomic_converter_args_20230223@1627.tsv Filters parameters file generated: filters_parameters_20230223@1627.tsv

Reading VCF... Error in SeqArray::seqOpen(gds.fn = data.safe$result, readonly = FALSE) : is.character(gds.fn) is not TRUE

Computation time, overall: 6 sec

Computation time, overall: 14 sec ######################### completed genomic_converter ########################## ✖ Importing data: vcf.file [6.7s]

could you please help me with this?

thierrygosselin commented 1 year ago

unable to reproduce. Follow guidelines for issues/bugs please