Hi,
when using assigner
mf<-radiator::genomic_converter(data="/gpfs/gpfs0/genomdata/Ecogenome/periwinkle/stacks/populations/s1_50%_50%_217ind_fullfiltered.recode.vcf", strata="/gpfs/gpfs0/genomdata/Ecogenome/periwinkle/stacks/populations/s1_pop") %>%dplyr::glimpse()
Hi, when using assigner mf<-radiator::genomic_converter(data="/gpfs/gpfs0/genomdata/Ecogenome/periwinkle/stacks/populations/s1_50%_50%_217ind_fullfiltered.recode.vcf", strata="/gpfs/gpfs0/genomdata/Ecogenome/periwinkle/stacks/populations/s1_pop") %>%dplyr::glimpse()
I get the following error:
################################################################################ ######################### radiator::genomic_converter ########################## ################################################################################ Execution date@time: 20230223@1627 Folder created: -277260_radiator_genomic_converter_20230223@1627 Function call and arguments stored in: radiator_genomic_converter_args_20230223@1627.tsv Filters parameters file generated: filters_parameters_20230223@1627.tsv
Reading VCF... Error in SeqArray::seqOpen(gds.fn = data.safe$result, readonly = FALSE) : is.character(gds.fn) is not TRUE
Computation time, overall: 6 sec
Computation time, overall: 14 sec ######################### completed genomic_converter ########################## ✖ Importing data: vcf.file [6.7s]
could you please help me with this?