Axes missing on interactive filtering plots

Istiompax1 commented 3 years ago

When I look to use Filter_rad and sex.markers interactive filtering functions, the code executes fine, however, the axes on the plots are missing. I have attached two example plots to show this. I have looking to reinstalled ggplot and radiator but these did not seem in resolve the issue.

An example of the code and processing as as below:

test1<-radiator::filter_rad(data = "mudcrab2.csv",

strata = "Mudcrab_Strata1.tsv", output = c("genlight"),

parallel.core = 1L) ################################################################################ ############################# radiator::filter_rad ############################# ################################################################################ Execution date@time: 20210614@1042 Folder created: filter_rad_20210614@1042 Function call and arguments stored in: radiator_filter_rad_args_20210614@1042.tsv File written: random.seed (483426) Filters parameters file generated: filters_parameters_20210614@1042.tsv Reading DArT file... Number of blacklisted samples: 0 DArT SNP format: genotypes in 1 Row Generating genotypes and calibrating REF/ALT alleles... Number of markers recalibrated based on counts of allele: 4846 Generating GDS... File written: radiator_20210614@1042.gds.rad

Number of chrom: 1 Number of locus: 32632 Number of SNPs: 38693 Number of strata: 10 Number of individuals: 188

Number of ind/strata: Mackay = 19 Hinchinbrook = 19 Karumba = 18 Moreton = 19 Gladstone = 19 Port_Stephens = 19 Wallis = 18 Macleay = 19 Clarence = 19 Tweed = 19

Number of duplicate id: 0

Computation time, overall: 22 sec ################################################################################ #################### radiator::filter_dart_reproducibility ##################### ################################################################################ Execution date@time: 20210614@1043 Function call and arguments stored in: radiator_filter_dart_reproducibility_args_20210614@1043.tsv

thierrygosselin commented 3 years ago

try with latest release if it's still relevant

Istiompax1 commented 3 years ago

Hi,

I updated to package version 1.2.0, and looked to run the filtering but still do not have axis labels on any plots.

Session info --------------------------------------------------------------------------------------------------------------------------------------------------------- setting value
version R version 4.0.3 (2020-10-10) os Windows 10 x64
system x86_64, mingw32
ui RStudio
language (EN)
collate English_Australia.1252
ctype English_Australia.1252
tz Australia/Brisbane
date 2021-06-17
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[1] C:/Users/WilliamsS/Documents/R/win-library/4.0 [2] C:/R-4.0.3/library

thierrygosselin / radiator

Axes missing on interactive filtering plots #131