tidy.data error - Githubissues

mgavery commented 2 years ago

Hi, I am getting an error when trying to run tidy_genepop. My ultimate goal is to convert the genepop to colony format, but I thought I'd take it one step at a time. Would you be able to help with this error? I have 562 individuals and 10,256 loci

tidy.data <- radiator::tidy_genepop(

data = "populations_GSR80removed.snps.gen",

strata = "Oly_strata.tsv",

tidy = TRUE) Error: x and y must share the same src, set copy = TRUE (may be slow).

Backtrace:

radiator::tidy_genepop(...)
dplyr:::left_join.data.frame(., strata.df, by = "INDIVIDUALS")
dplyr::auto_copy(x, y, copy = copy)
dplyr:::glubort(...) Run rlang::last_trace() to see the full context.

thierrygosselin commented 2 years ago

Dear Mackenzie, do you mind sending the dataset and strata by email so that I can replicate your problem

Best Thierry

thierrygosselin commented 2 years ago

Hi Mackenzie, I tested your data with the same code and found no problem.

Try re-installing radiator

library(radiator)
setwd("PATH/TO/YOUR/FOLDER")
tidy.data <- radiator::tidy_genepop(
  data = "populations_GSR80removed.snps.gen",
  strata = "Oly_strata.tsv",
  tidy = TRUE)
colony.file <- radiator::write_colony(data = tidy.data)

If you are still getting an error, give me the output of this:devtools::session_info()

mgavery commented 2 years ago

Thanks so much for your assistance with this. I really appreciate it.

I am still getting the same error. From the session_info I can see that SeqArray package I'm running is <1.28. I haven't figured out how to get this updated yet. Do you see any other issues here that I have to solve - other than getting an update SeqArray package? Thanks again :)

Best,

Mackenzie

devtools::session_info() ─ Session info ────────────────────────────────────────────────────────────────────────────────── setting value version R version 3.6.3 (2020-02-29) os macOS Catalina 10.15.7 system x86_64, darwin15.6.0 ui RStudio language (EN) collate en_US.UTF-8 ctype en_US.UTF-8 tz America/Los_Angeles date 2021-11-22

─ Packages ────────────────────────────────────────────────────────────────────────────────────── ! package * version date lib source

ade4 * 1.7-16 2020-10-28 [1] CRAN (R 3.6.2)

adegenet * 2.1.3 2020-05-10 [1] CRAN (R 3.6.2)

ape * 5.4-1 2020-08-13 [1] CRAN (R 3.6.2)

assertthat 0.2.1 2019-03-21 [1] CRAN (R 3.6.0)

backports 1.2.1 2020-12-09 [1] CRAN (R 3.6.2)

Biobase 2.46.0 2019-10-29 [1] Bioconductor

BiocGenerics 0.32.0 2019-10-29 [1] Bioconductor

BiocManager 1.30.10 2019-11-16 [1] CRAN (R 3.6.0)

Biostrings 2.54.0 2019-10-29 [1] Bioconductor

bitops 1.0-6 2013-08-17 [1] CRAN (R 3.6.0)

boot 1.3-24 2019-12-20 [2] CRAN (R 3.6.3)

broom 0.7.3 2020-12-16 [1] CRAN (R 3.6.2)

callr 3.5.1 2020-10-13 [1] CRAN (R 3.6.2)

class 7.3-15 2019-01-01 [2] CRAN (R 3.6.3)

classInt 0.4-3 2020-04-07 [1] CRAN (R 3.6.2)

V cli 2.2.0 2021-10-27 [1] CRAN (R 3.6.2)

cluster 2.1.0 2019-06-19 [2] CRAN (R 3.6.3)

coda 0.19-4 2020-09-30 [1] CRAN (R 3.6.2)

codetools 0.2-16 2018-12-24 [2] CRAN (R 3.6.3)

colorspace 2.0-0 2020-11-11 [1] CRAN (R 3.6.2)

crayon 1.3.4 2017-09-16 [1] CRAN (R 3.6.0)

curl 4.3 2019-12-02 [1] CRAN (R 3.6.0)

data.table * 1.13.4 2020-12-08 [1] CRAN (R 3.6.2)

DBI 1.1.0 2019-12-15 [1] CRAN (R 3.6.0)

deldir 0.2-3 2020-11-09 [1] CRAN (R 3.6.2)

desc 1.2.0 2018-05-01 [1] CRAN (R 3.6.0)

devtools * 2.3.2 2020-09-18 [1] CRAN (R 3.6.2)

digest 0.6.27 2020-10-24 [1] CRAN (R 3.6.2)

doParallel 1.0.16 2020-10-16 [1] CRAN (R 3.6.2)

V dplyr * 1.0.2 2021-06-18 [1] CRAN (R 3.6.2)

e1071 1.7-4 2020-10-14 [1] CRAN (R 3.6.2)

V ellipsis 0.3.1 2021-04-29 [1] CRAN (R 3.6.2)

expm 0.999-5 2020-07-20 [1] CRAN (R 3.6.2)

factoextra * 1.0.7 2020-04-01 [1] CRAN (R 3.6.2)

fansi 0.4.1 2020-01-08 [1] CRAN (R 3.6.0)

farver 2.0.3 2020-01-16 [1] CRAN (R 3.6.0)

fastmap 1.1.0 2021-01-25 [1] CRAN (R 3.6.2)

foreach 1.5.1 2020-10-15 [1] CRAN (R 3.6.2)

formula.tools 1.7.1 2018-03-01 [1] CRAN (R 3.6.0)

fs 1.5.0 2020-07-31 [1] CRAN (R 3.6.2)

gdata 2.18.0 2017-06-06 [1] CRAN (R 3.6.0)

gdsfmt 1.22.0 2019-10-29 [1] Bioconductor

generics 0.1.0 2020-10-31 [1] CRAN (R 3.6.2)

GenomeInfoDb 1.22.1 2020-03-27 [1] Bioconductor

GenomeInfoDbData 1.2.2 2020-03-31 [1] Bioconductor

GenomicRanges 1.38.0 2019-10-29 [1] Bioconductor

ggplot2 * 3.3.3 2020-12-30 [1] CRAN (R 3.6.3)

ggrepel * 0.9.0 2020-12-16 [1] CRAN (R 3.6.2)

glue 1.4.2 2020-08-27 [1] CRAN (R 3.6.2)

gmodels 2.18.1 2018-06-25 [1] CRAN (R 3.6.0)

gridExtra 2.3 2017-09-09 [1] CRAN (R 3.6.0)

gtable 0.3.0 2019-03-25 [1] CRAN (R 3.6.0)

gtools 3.8.2 2020-03-31 [1] CRAN (R 3.6.2)

GWASExactHW 1.01 2013-01-05 [1] CRAN (R 3.6.0)

hms 0.5.3 2020-01-08 [1] CRAN (R 3.6.0)

htmltools 0.5.2 2021-08-25 [1] CRAN (R 3.6.2)

httpuv 1.5.4 2020-06-06 [1] CRAN (R 3.6.2)

igraph 1.2.6 2020-10-06 [1] CRAN (R 3.6.2)

IRanges 2.20.2 2020-01-13 [1] Bioconductor

iterators 1.0.13 2020-10-15 [1] CRAN (R 3.6.2)

KernSmooth 2.23-16 2019-10-15 [2] CRAN (R 3.6.3)

labeling 0.4.2 2020-10-20 [1] CRAN (R 3.6.2)

later 1.1.0.1 2020-06-05 [1] CRAN (R 3.6.2)

lattice 0.20-38 2018-11-04 [2] CRAN (R 3.6.3)

LearnBayes 2.15.1 2018-03-18 [1] CRAN (R 3.6.0)

V lifecycle 0.2.0 2021-09-24 [1] CRAN (R 3.6.2)

logistf 1.24 2020-09-16 [1] CRAN (R 3.6.2)

magrittr 2.0.1 2020-11-17 [1] CRAN (R 3.6.2)

MASS 7.3-51.5 2019-12-20 [2] CRAN (R 3.6.3)

Matrix 1.2-18 2019-11-27 [2] CRAN (R 3.6.3)

memoise 1.1.0 2017-04-21 [1] CRAN (R 3.6.0)

mgcv 1.8-31 2019-11-09 [2] CRAN (R 3.6.3)

mice 3.12.0 2020-11-14 [1] CRAN (R 3.6.2)

mime 0.9 2020-02-04 [1] CRAN (R 3.6.0)

munsell 0.5.0 2018-06-12 [1] CRAN (R 3.6.0)

nlme 3.1-144 2020-02-06 [2] CRAN (R 3.6.3)

operator.tools 1.6.3 2017-02-28 [1] CRAN (R 3.6.0)

pegas * 0.14 2020-09-16 [1] CRAN (R 3.6.2)

permute 0.9-5 2019-03-12 [1] CRAN (R 3.6.0)

pheatmap * 1.0.12 2019-01-04 [1] CRAN (R 3.6.0)

V pillar 1.4.7 2021-10-18 [1] CRAN (R 3.6.2)

pkgbuild 1.2.0 2020-12-15 [1] CRAN (R 3.6.2)

pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 3.6.0)

pkgload 1.1.0 2020-05-29 [1] CRAN (R 3.6.2)

plyr * 1.8.6 2020-03-03 [1] CRAN (R 3.6.0)

prettyunits 1.1.1 2020-01-24 [1] CRAN (R 3.6.0)

processx 3.4.5 2020-11-30 [1] CRAN (R 3.6.2)

progress 1.2.2 2019-05-16 [1] CRAN (R 3.6.0)

promises 1.1.1 2020-06-09 [1] CRAN (R 3.6.2)

ps 1.5.0 2020-12-05 [1] CRAN (R 3.6.2)

purrr 0.3.4 2020-04-17 [1] CRAN (R 3.6.2)

R6 2.5.0 2020-10-28 [1] CRAN (R 3.6.2)

V radiator * 1.1.5 2021-11-22 [1] Github @.***) raster 3.4-5 2020-11-14 [1] CRAN (R 3.6.2)

RColorBrewer * 1.1-2 2014-12-07 [1] CRAN (R 3.6.0)

Rcpp 1.0.5 2020-07-06 [1] CRAN (R 3.6.2)

RCurl 1.98-1.2 2020-04-18 [1] CRAN (R 3.6.2)

readr 1.4.0 2020-10-05 [1] CRAN (R 3.6.2)

remotes 2.4.1 2021-09-29 [1] CRAN (R 3.6.2)

reshape2 * 1.4.4 2020-04-09 [1] CRAN (R 3.6.2)

rlang 0.4.12 2021-10-18 [1] CRAN (R 3.6.2)

rprojroot 2.0.2 2020-11-15 [1] CRAN (R 3.6.2)

S4Vectors 0.24.3 2020-01-18 [1] Bioconductor

scales 1.1.1 2020-05-11 [1] CRAN (R 3.6.2)

SeqArray 1.26.2 2019-12-26 [1] Bioconductor

seqinr 4.2-5 2020-12-17 [1] CRAN (R 3.6.2)

SeqVarTools 1.24.1 2020-03-17 [1] Bioconductor

sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 3.6.0)

sf 0.9-6 2020-09-13 [1] CRAN (R 3.6.2)

shiny 1.5.0 2020-06-23 [1] CRAN (R 3.6.2)

sp 1.4-4 2020-10-07 [1] CRAN (R 3.6.2)

spData 0.3.8 2020-07-03 [1] CRAN (R 3.6.2)

spdep 1.1-5 2020-06-29 [1] CRAN (R 3.6.2)

StAMPP * 1.6.1 2020-03-20 [1] CRAN (R 3.6.0)

stringi 1.5.3 2020-09-09 [1] CRAN (R 3.6.2)

stringr 1.4.0 2019-02-10 [1] CRAN (R 3.6.0)

testthat 3.0.1 2020-12-17 [1] CRAN (R 3.6.2)

tibble * 3.0.4 2020-10-12 [1] CRAN (R 3.6.2)

tidyr * 1.1.2 2020-08-27 [1] CRAN (R 3.6.2)

tidyselect 1.1.0 2020-05-11 [1] CRAN (R 3.6.2)

units 0.6-7 2020-06-13 [1] CRAN (R 3.6.2)

UpSetR 1.4.0 2019-05-22 [1] CRAN (R 3.6.0)

usethis * 2.0.0 2020-12-10 [1] CRAN (R 3.6.2)

V vctrs 0.3.6 2021-04-29 [1] CRAN (R 3.6.2)

vegan 2.5-7 2020-11-28 [1] CRAN (R 3.6.2)

withr 2.3.0 2020-09-22 [1] CRAN (R 3.6.2)

xtable 1.8-4 2019-04-21 [1] CRAN (R 3.6.0)

XVector 0.26.0 2019-10-29 [1] Bioconductor

zlibbioc 1.32.0 2019-10-29 [1] Bioconductor

[1] /Users/mackenzie.gavery/Library/R/3.6/library [2] /Library/Frameworks/R.framework/Versions/3.6/Resources/library

V ── Loaded and on-disk version mismatch.

On Sun, Nov 21, 2021 at 11:24 AM Thierry Gosselin @.***> wrote:

Hi Mackenzie, I tested your data with the same code and found no problem.

Try re-installing radiator https://thierrygosselin.github.io/radiator/index.html

library(radiator) setwd("PATH/TO/YOUR/FOLDER") tidy.data <- radiator::tidy_genepop( data = "populations_GSR80removed.snps.gen", strata = "Oly_strata.tsv", tidy = TRUE) colony.file <- radiator::write_colony(data = tidy.data)

If you are still getting an error, give me the output of this: devtools::session_info()

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/thierrygosselin/radiator/issues/142#issuecomment-974878466, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABCNWQQCV3T3S6JOF62YAP3UNFBOVANCNFSM5IE43B3Q . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

mgavery commented 2 years ago

Apologies! I needed to restart RStudio. I am back in action now and radiator is working for me. Thanks again!!

Best,

Mackenzie

On Mon, Nov 22, 2021 at 7:33 AM Mackenzie Gavery @.***> wrote:

Thanks so much for your assistance with this. I really appreciate it.

I am still getting the same error. From the session_info I can see that SeqArray package I'm running is <1.28. I haven't figured out how to get this updated yet. Do you see any other issues here that I have to solve - other than getting an update SeqArray package? Thanks again :)

Best,

Mackenzie

devtools::session_info() ─ Session info ────────────────────────────────────────────────────────────────────────────────── setting value version R version 3.6.3 (2020-02-29) os macOS Catalina 10.15.7 system x86_64, darwin15.6.0 ui RStudio language (EN) collate en_US.UTF-8 ctype en_US.UTF-8 tz America/Los_Angeles date 2021-11-22

─ Packages ────────────────────────────────────────────────────────────────────────────────────── ! package * version date lib source

ade4 * 1.7-16 2020-10-28 [1] CRAN (R 3.6.2)

adegenet * 2.1.3 2020-05-10 [1] CRAN (R 3.6.2)

ape * 5.4-1 2020-08-13 [1] CRAN (R 3.6.2)

assertthat 0.2.1 2019-03-21 [1] CRAN (R 3.6.0)

backports 1.2.1 2020-12-09 [1] CRAN (R 3.6.2)

Biobase 2.46.0 2019-10-29 [1] Bioconductor

BiocGenerics 0.32.0 2019-10-29 [1] Bioconductor

BiocManager 1.30.10 2019-11-16 [1] CRAN (R 3.6.0)

Biostrings 2.54.0 2019-10-29 [1] Bioconductor

bitops 1.0-6 2013-08-17 [1] CRAN (R 3.6.0)

boot 1.3-24 2019-12-20 [2] CRAN (R 3.6.3)

broom 0.7.3 2020-12-16 [1] CRAN (R 3.6.2)

callr 3.5.1 2020-10-13 [1] CRAN (R 3.6.2)

class 7.3-15 2019-01-01 [2] CRAN (R 3.6.3)

classInt 0.4-3 2020-04-07 [1] CRAN (R 3.6.2)

V cli 2.2.0 2021-10-27 [1] CRAN (R 3.6.2)

cluster 2.1.0 2019-06-19 [2] CRAN (R 3.6.3)

coda 0.19-4 2020-09-30 [1] CRAN (R 3.6.2)

codetools 0.2-16 2018-12-24 [2] CRAN (R 3.6.3)

colorspace 2.0-0 2020-11-11 [1] CRAN (R 3.6.2)

crayon 1.3.4 2017-09-16 [1] CRAN (R 3.6.0)

curl 4.3 2019-12-02 [1] CRAN (R 3.6.0)

data.table * 1.13.4 2020-12-08 [1] CRAN (R 3.6.2)

DBI 1.1.0 2019-12-15 [1] CRAN (R 3.6.0)

deldir 0.2-3 2020-11-09 [1] CRAN (R 3.6.2)

desc 1.2.0 2018-05-01 [1] CRAN (R 3.6.0)

devtools * 2.3.2 2020-09-18 [1] CRAN (R 3.6.2)

digest 0.6.27 2020-10-24 [1] CRAN (R 3.6.2)

doParallel 1.0.16 2020-10-16 [1] CRAN (R 3.6.2)

V dplyr * 1.0.2 2021-06-18 [1] CRAN (R 3.6.2)

e1071 1.7-4 2020-10-14 [1] CRAN (R 3.6.2)

V ellipsis 0.3.1 2021-04-29 [1] CRAN (R 3.6.2)

expm 0.999-5 2020-07-20 [1] CRAN (R 3.6.2)

factoextra * 1.0.7 2020-04-01 [1] CRAN (R 3.6.2)

fansi 0.4.1 2020-01-08 [1] CRAN (R 3.6.0)

farver 2.0.3 2020-01-16 [1] CRAN (R 3.6.0)

fastmap 1.1.0 2021-01-25 [1] CRAN (R 3.6.2)

foreach 1.5.1 2020-10-15 [1] CRAN (R 3.6.2)

formula.tools 1.7.1 2018-03-01 [1] CRAN (R 3.6.0)

fs 1.5.0 2020-07-31 [1] CRAN (R 3.6.2)

gdata 2.18.0 2017-06-06 [1] CRAN (R 3.6.0)

gdsfmt 1.22.0 2019-10-29 [1] Bioconductor

generics 0.1.0 2020-10-31 [1] CRAN (R 3.6.2)

GenomeInfoDb 1.22.1 2020-03-27 [1] Bioconductor

GenomeInfoDbData 1.2.2 2020-03-31 [1] Bioconductor

GenomicRanges 1.38.0 2019-10-29 [1] Bioconductor

ggplot2 * 3.3.3 2020-12-30 [1] CRAN (R 3.6.3)

ggrepel * 0.9.0 2020-12-16 [1] CRAN (R 3.6.2)

glue 1.4.2 2020-08-27 [1] CRAN (R 3.6.2)

gmodels 2.18.1 2018-06-25 [1] CRAN (R 3.6.0)

gridExtra 2.3 2017-09-09 [1] CRAN (R 3.6.0)

gtable 0.3.0 2019-03-25 [1] CRAN (R 3.6.0)

gtools 3.8.2 2020-03-31 [1] CRAN (R 3.6.2)

GWASExactHW 1.01 2013-01-05 [1] CRAN (R 3.6.0)

hms 0.5.3 2020-01-08 [1] CRAN (R 3.6.0)

htmltools 0.5.2 2021-08-25 [1] CRAN (R 3.6.2)

httpuv 1.5.4 2020-06-06 [1] CRAN (R 3.6.2)

igraph 1.2.6 2020-10-06 [1] CRAN (R 3.6.2)

IRanges 2.20.2 2020-01-13 [1] Bioconductor

iterators 1.0.13 2020-10-15 [1] CRAN (R 3.6.2)

KernSmooth 2.23-16 2019-10-15 [2] CRAN (R 3.6.3)

labeling 0.4.2 2020-10-20 [1] CRAN (R 3.6.2)

later 1.1.0.1 2020-06-05 [1] CRAN (R 3.6.2)

lattice 0.20-38 2018-11-04 [2] CRAN (R 3.6.3)

LearnBayes 2.15.1 2018-03-18 [1] CRAN (R 3.6.0)

V lifecycle 0.2.0 2021-09-24 [1] CRAN (R 3.6.2)

logistf 1.24 2020-09-16 [1] CRAN (R 3.6.2)

magrittr 2.0.1 2020-11-17 [1] CRAN (R 3.6.2)

MASS 7.3-51.5 2019-12-20 [2] CRAN (R 3.6.3)

Matrix 1.2-18 2019-11-27 [2] CRAN (R 3.6.3)

memoise 1.1.0 2017-04-21 [1] CRAN (R 3.6.0)

mgcv 1.8-31 2019-11-09 [2] CRAN (R 3.6.3)

mice 3.12.0 2020-11-14 [1] CRAN (R 3.6.2)

mime 0.9 2020-02-04 [1] CRAN (R 3.6.0)

munsell 0.5.0 2018-06-12 [1] CRAN (R 3.6.0)

nlme 3.1-144 2020-02-06 [2] CRAN (R 3.6.3)

operator.tools 1.6.3 2017-02-28 [1] CRAN (R 3.6.0)

pegas * 0.14 2020-09-16 [1] CRAN (R 3.6.2)

permute 0.9-5 2019-03-12 [1] CRAN (R 3.6.0)

pheatmap * 1.0.12 2019-01-04 [1] CRAN (R 3.6.0)

V pillar 1.4.7 2021-10-18 [1] CRAN (R 3.6.2)

pkgbuild 1.2.0 2020-12-15 [1] CRAN (R 3.6.2)

pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 3.6.0)

pkgload 1.1.0 2020-05-29 [1] CRAN (R 3.6.2)

plyr * 1.8.6 2020-03-03 [1] CRAN (R 3.6.0)

prettyunits 1.1.1 2020-01-24 [1] CRAN (R 3.6.0)

processx 3.4.5 2020-11-30 [1] CRAN (R 3.6.2)

progress 1.2.2 2019-05-16 [1] CRAN (R 3.6.0)

promises 1.1.1 2020-06-09 [1] CRAN (R 3.6.2)

ps 1.5.0 2020-12-05 [1] CRAN (R 3.6.2)

purrr 0.3.4 2020-04-17 [1] CRAN (R 3.6.2)

R6 2.5.0 2020-10-28 [1] CRAN (R 3.6.2)

V radiator * 1.1.5 2021-11-22 [1] Github @.***) raster 3.4-5 2020-11-14 [1] CRAN (R 3.6.2)

RColorBrewer * 1.1-2 2014-12-07 [1] CRAN (R 3.6.0)

Rcpp 1.0.5 2020-07-06 [1] CRAN (R 3.6.2)

RCurl 1.98-1.2 2020-04-18 [1] CRAN (R 3.6.2)

readr 1.4.0 2020-10-05 [1] CRAN (R 3.6.2)

remotes 2.4.1 2021-09-29 [1] CRAN (R 3.6.2)

reshape2 * 1.4.4 2020-04-09 [1] CRAN (R 3.6.2)

rlang 0.4.12 2021-10-18 [1] CRAN (R 3.6.2)

rprojroot 2.0.2 2020-11-15 [1] CRAN (R 3.6.2)

S4Vectors 0.24.3 2020-01-18 [1] Bioconductor

scales 1.1.1 2020-05-11 [1] CRAN (R 3.6.2)

SeqArray 1.26.2 2019-12-26 [1] Bioconductor

seqinr 4.2-5 2020-12-17 [1] CRAN (R 3.6.2)

SeqVarTools 1.24.1 2020-03-17 [1] Bioconductor

sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 3.6.0)

sf 0.9-6 2020-09-13 [1] CRAN (R 3.6.2)

shiny 1.5.0 2020-06-23 [1] CRAN (R 3.6.2)

sp 1.4-4 2020-10-07 [1] CRAN (R 3.6.2)

spData 0.3.8 2020-07-03 [1] CRAN (R 3.6.2)

spdep 1.1-5 2020-06-29 [1] CRAN (R 3.6.2)

StAMPP * 1.6.1 2020-03-20 [1] CRAN (R 3.6.0)

stringi 1.5.3 2020-09-09 [1] CRAN (R 3.6.2)

stringr 1.4.0 2019-02-10 [1] CRAN (R 3.6.0)

testthat 3.0.1 2020-12-17 [1] CRAN (R 3.6.2)

tibble * 3.0.4 2020-10-12 [1] CRAN (R 3.6.2)

tidyr * 1.1.2 2020-08-27 [1] CRAN (R 3.6.2)

tidyselect 1.1.0 2020-05-11 [1] CRAN (R 3.6.2)

units 0.6-7 2020-06-13 [1] CRAN (R 3.6.2)

UpSetR 1.4.0 2019-05-22 [1] CRAN (R 3.6.0)

usethis * 2.0.0 2020-12-10 [1] CRAN (R 3.6.2)

V vctrs 0.3.6 2021-04-29 [1] CRAN (R 3.6.2)

vegan 2.5-7 2020-11-28 [1] CRAN (R 3.6.2)

withr 2.3.0 2020-09-22 [1] CRAN (R 3.6.2)

xtable 1.8-4 2019-04-21 [1] CRAN (R 3.6.0)

XVector 0.26.0 2019-10-29 [1] Bioconductor

zlibbioc 1.32.0 2019-10-29 [1] Bioconductor

[1] /Users/mackenzie.gavery/Library/R/3.6/library [2] /Library/Frameworks/R.framework/Versions/3.6/Resources/library

V ── Loaded and on-disk version mismatch.

On Sun, Nov 21, 2021 at 11:24 AM Thierry Gosselin < @.***> wrote:

Hi Mackenzie, I tested your data with the same code and found no problem.

Try re-installing radiator https://thierrygosselin.github.io/radiator/index.html

library(radiator) setwd("PATH/TO/YOUR/FOLDER") tidy.data <- radiator::tidy_genepop( data = "populations_GSR80removed.snps.gen", strata = "Oly_strata.tsv", tidy = TRUE) colony.file <- radiator::write_colony(data = tidy.data)

If you are still getting an error, give me the output of this: devtools::session_info()

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thierrygosselin / radiator

tidy.data error #142