filter_rad error: Column `READ_DEPTH` is a `SeqVarDataList` object.

Hi Thierry, I am trying to use the filter_rad function but I am getting an error when sourcing the read depth as it is stored as a SeqVarDatalist object. It seems like I could probably just coerce the read depth into a vector, but I am not sure at what point in the pipeline that I am getting this error. My code, errors, and session information are below.

data <- radiator::filter_rad( data = 'angsd/angsdput.vcf', strata = meta_all, output = "genind" )

################################################################################ ############################# radiator::filter_rad ############################# ################################################################################ Execution date@time: 20220921@0904 Folder created: filter_rad_20220921@0904 Function call and arguments stored in: radiator_filter_rad_args_20220921@0904.tsv File written: random.seed (948719)
Filters parameters file generated: filters_parameters_20220921@0904.tsv

Reading VCF...

Data summary: number of samples: 316 number of markers: 7825

Generating individual stats... Error: ! All columns in a tibble must be vectors. ✖ Column READ_DEPTH is a SeqVarDataList object. Run rlang::last_error() to see where the error occurred.

Computation time, overall: 17 sec ############################# completed filter_rad #############################

sessionInfo() R version 4.2.1 (2022-06-23) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Big Sur 11.3.1

Matrix products: default LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] SeqArray_1.36.3 SNPRelate_1.30.1 gdsfmt_1.32.0 radiator_1.2.2 vcfR_1.13.0

thierrygosselin / radiator

filter_rad error: Column `READ_DEPTH` is a `SeqVarDataList` object. #163