Closed cccnrc closed 1 year ago
I am trying to load a VCF file in R and use tidy_vcf on it. I am unable to load it as I get this error:
tidy_vcf
################################################################################ ############################## radiator::read_vcf ############################## ################################################################################ Execution date@time: 20221027@1106 Folder created: read_vcf_20221027@1106 Function call and arguments stored in: radiator_read_vcf_args_20221027@1106.tsv File written: random.seed (361155) Reading VCF... Error in if (is.stacks) { : the condition has length > 1 In addition: Warning message: In stringi::stri_detect_fixed(str = check.source, pattern = "freeBayes") && : 'length(x) = 3 > 1' in coercion to 'logical(1)' Computation time, overall: 5 sec ############################## completed read_vcf ##############################
Does anybody have an idea on where this issue come from?
https://github.com/thierrygosselin/radiator/issues/new?assignees=&labels=&template=bug_report.md&title=
Please read carefully how to get assistance. Nothing I can do currently for you. re-open the issue if you find a way to answer my basic steps
I am trying to load a VCF file in R and use
tidy_vcf
on it. I am unable to load it as I get this error:Does anybody have an idea on where this issue come from?