thierrygosselin / radiator

RADseq Data Exploration, Manipulation and Visualization using R
https://thierrygosselin.github.io/radiator/
GNU General Public License v3.0
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error in reading VCF file #167

Closed cccnrc closed 1 year ago

cccnrc commented 1 year ago

I am trying to load a VCF file in R and use tidy_vcf on it. I am unable to load it as I get this error:

################################################################################
############################## radiator::read_vcf ##############################
################################################################################
Execution date@time: 20221027@1106
Folder created: read_vcf_20221027@1106
Function call and arguments stored in: radiator_read_vcf_args_20221027@1106.tsv
File written: random.seed (361155)                                  

Reading VCF... 
Error in if (is.stacks) { : the condition has length > 1
In addition: Warning message:
In stringi::stri_detect_fixed(str = check.source, pattern = "freeBayes") &&  :
  'length(x) = 3 > 1' in coercion to 'logical(1)'

Computation time, overall: 5 sec
############################## completed read_vcf ##############################

Does anybody have an idea on where this issue come from?

thierrygosselin commented 1 year ago

https://github.com/thierrygosselin/radiator/issues/new?assignees=&labels=&template=bug_report.md&title=

Please read carefully how to get assistance. Nothing I can do currently for you. re-open the issue if you find a way to answer my basic steps