Error with genomic_converter

[zcebeci]

Dear Thierry,

I am trying to convert a toy example data in PLINK bed format to VCF and genlight. It works, creates directories and then stops with Error in file(con, "r") . Below please find my R codes and the relevant bug report.

radiator::genomic_converter(

• data = " example1.bed",
• strata = NULL, #"example_strata.tsv",

• output = c("vcf", "genlight", "gtypes"),

• output = c("gds"),
• filename = fn,
• parallel.core = parallel::detectCores() - 1,
• verbose = TRUE
• ) ################################################################################ ######################### radiator::genomic_converter ########################## ################################################################################ Execution date@time: 20231016@1720 Folder created: 04_radiator_genomic_converter_20231016@1720

wrote 233.00B in  0s, 6.30MB/s

wrote 2.15GB in  0s, 2.15GB/s

Function call and arguments stored in: radiator_genomic_converter_args_20231016@1720.tsv Filters parameters file generated: filters_parameters_20231016@1720.tsv Error in file(con, "r") : bağlantı açılamadı

Computation time, overall: 0 sec ######################### completed genomic_converter ##########################

rlang::last_error() Hata: Can't show last error because no error was recorded yet

Thank you in advance for your reply. All the best

[thierrygosselin]

Dear Zeynel, I'm unable to reproduce your error, send the files by email.

[thierrygosselin]

re-open if you're still using