thierrygosselin
commented
3 years ago Hi, sorry about the problem you're experiencing. I don't think the problem is on your side...
Over the week end I've been upgrading the codes to work better with Windows and the parallel mode.
I've switched to future package for parallelization and carrier to contains globals. Anyway, short story,
it's not you.
Do you mind sending the data (by email) so that I can try to replicate the problem on my Mac ?
Best Thierry
rh565
Hi,
I am having some trouble with the write_colony function. When running:
data <- radiator::read_vcf(data = "populations.snps.vcf", parallel.core = 1L) colony_file <- radiator::write_colony(data = data)
I get the error message:
Importing data... Calibrating REF/ALT alleles... Error in dplyr::select(x, -SPLIT_VEC) %>% dplyr::mutate(GT_VCF_NUC = dplyr::if_else(GT_BIN == : could not find function "%>%"
I thought this might be a problem with my installation of dplyr or magrittr, but I have just updated R (now running R 4.0.3), RStudio (v1.3.1093) and re-installed all packages. %>% works with no problem in my own code.
Session info --------------------------------------------------------------- setting value
version R version 4.0.3 (2020-10-10) os Windows 10 x64
system x86_64, mingw32
ui RStudio
language (EN)
collate English_United Kingdom.1252 ctype English_United Kingdom.1252 tz Europe/London
date 2020-10-19
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[1] F:/R-4.0.3/library