snakemake.exceptions.WorkflowError: Config file circos not found

[guochangjiang]

$ proteny -t 10 example_config.json snakemake --snakefile "/opt/Biosoft/proteny/Snakefile" --cores "10" --use-conda --conda-prefix "/opt/Biosoft/proteny/.snakemake/conda" --configfile "example_config.json" circos Traceback (most recent call last): File "/opt/anaconda3/lib/python3.8/site-packages/snakemake/io.py", line 1564, in _load_configfile with open(configpath) as f: FileNotFoundError: [Errno 2] No such file or directory: 'circos'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/opt/anaconda3/bin/snakemake", line 10, in sys.exit(main()) File "/opt/anaconda3/lib/python3.8/site-packages/snakemake/init.py", line 2551, in main success = snakemake( File "/opt/anaconda3/lib/python3.8/site-packages/snakemake/init.py", line 503, in snakemake overwrite_config.update(load_configfile(f)) File "/opt/anaconda3/lib/python3.8/site-packages/snakemake/io.py", line 1594, in load_configfile config = _load_configfile(configpath) File "/opt/anaconda3/lib/python3.8/site-packages/snakemake/io.py", line 1589, in _load_configfile raise WorkflowError("{} file {} not found.".format(filetype, configpath)) snakemake.exceptions.WorkflowError: Config file circos not found.

[RmmlAndReas]

Same issue for me!

[alambard]

same issue here too

[Romualdo22]

same issue!