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thkuo / seq2geno

Computational pipeline for genomic features of bacterial population
GNU General Public License v3.0
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legal characters #15

Closed thkuo closed 6 years ago

thkuo commented 6 years ago

For example, some gene names in the roary outcome have a quote, which caused problem when launching mafft in the command

thkuo commented 6 years ago

How to control and check them?

thkuo commented 6 years ago

For gene names, single quote('), double quote("), and spaces and tabs should replaced.

thkuo commented 6 years ago

Solved in the roary parsing script (makeGroupAln.py) also refer 359067957c5346b58e4442ac26e82702c36570eb