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thkuo / seq2geno

Computational pipeline for genomic features of bacterial population
GNU General Public License v3.0
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Workflow independence #22

Open thkuo opened 6 years ago

thkuo commented 6 years ago

The six final output files:

  1. phylogeny
  2. syn SNPs table
  3. non-syn SNPs table
  4. indel table
  5. expression table
  6. gpa table

should all be optional. When a file is precomputed or not needed by the user, the corresponding rules except for those required by the other outputs should be turned off.

thkuo commented 6 years ago

Be aware about #9