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thliebig / openEMS-Project

openEMS is a free and open electromagnetic field solver using the FDTD method.
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Invalid float in temp file #212

Closed kyle-beatty closed 1 day ago

kyle-beatty commented 5 months ago

I am running openEMS on Python 3.11.9. My OS is Windows 11 Enterprise. When I run the following code, adapted from this tutorial, I get the results shown below the code. The file containing the invalid float is port_it_0, and it is copied below the output. The program also does not write the xml file rect_wg.xml

Code

import os, tempfile
from pylab import *

# Add dll folder to trusted locations
dll_directory = 'C:\\Users\\KyleBeatty\\Downloads\\openEMS_v0.0.36\\openEMS\\python'
os.add_dll_directory(dll_directory)

from CSXCAD import ContinuousStructure
from openEMS import openEMS
from openEMS.physical_constants import *

now = datetime.datetime.now()
now_string = now.strftime('%m-%d_%H-%M')
Sim_Path = os.path.join(os.getcwd(), 'Rect_WGi_{}'.format(now_string))

post_proc_only = False
unit = 1e-6

a = 10700
b = 4300
length = 50000

f_start = 20e9
f_0 = 24e9
f_stop = 26e9
lambda0 = C0/f_0/unit;

TE_mode = 'TE10'

mesh_res = lambda0 / 30

FDTD = openEMS(NrTS=1e4)
FDTD.SetGaussExcite(0.5 * (f_start+f_stop), 0.5 * (f_stop-f_start))

FDTD.SetBoundaryCond([0, 0, 0, 0, 3, 3])

# set up geometry and mesh

CSX = ContinuousStructure()
FDTD.SetCSX(CSX)
mesh = CSX.GetGrid()
mesh.SetDeltaUnit(unit)

mesh.AddLine('x', [0, a])
mesh.AddLine('y', [0, b])
mesh.AddLine('z', [0, length])

# apply the waveguide port

ports = []
start = [0, 0, 10*mesh_res]
stop = [a, b, 15 * mesh_res]

mesh.AddLine('z', [start[2], stop[2]])
ports.append(FDTD.AddRectWaveGuidePort(0, start, stop, 'z', a*unit, b*unit, TE_mode, 1))

start = [0, 0, length- 10*mesh_res]
stop = [a, b, length - 15 * mesh_res]

mesh.AddLine('z', [start[2], stop[2]])
ports.append(FDTD.AddRectWaveGuidePort(0, start, stop, 'z', a*unit, b*unit, TE_mode))

mesh.SmoothMeshLines('all', mesh_res, ratio=1.4)

# Define dump box
Et = CSX.AddDump('Et', file_type=0, sub_sampling=[2, 2, 2])
start = [0, 0, 0]
stop = [a, b, length]
Et.AddBox(start, stop)

# Run simulation
if True:  # debugging only
    CSX_file = os.path.join(Sim_Path, 'rect_wg.xml')
    if not os.path.exists(Sim_Path):
        os.mkdir(Sim_Path)
    print('writing to xml')
    CSX.Write2XML(CSX_file)
    print('written to xml')
    #from CSXCAD import AppCSXCAD_BIN
    #os.system(AppCSXCAD_BIN + ' "{}"'.format(CSX_file))

if not post_proc_only:
    FDTD.Run(Sim_Path, cleanup=True)

# post-processing and plotting
freq = linspace(f_start, f_stop, 201)
for port in ports:
    #print('{} {}'.format(Sim_Path, freq))
    port.CalcPort(Sim_Path, freq)

Output

writing to xml
written to xml
 ----------------------------------------------------------------------
 | openEMS 64bit -- version v0.0.36
 | (C) 2010-2023 Thorsten Liebig <thorsten.liebig@gmx.de>  GPL license
 ----------------------------------------------------------------------
        Used external libraries:
                CSXCAD -- Version: v0.6.3
                hdf5   -- Version: 1.12.0
                          compiled against: HDF5 library version: 1.12.0
                tinyxml -- compiled against: 2.6.2
                fparser
                boost  -- compiled against: 1_72
                vtk -- Version: 8.2.0
                       compiled against: 8.2.0

Create FDTD operator (compressed SSE + multi-threading)
FDTD simulation size: 27x12x132 --> 42768 FDTD cells
FDTD timestep is: 5.18459e-13 s; Nyquist rate: 37 timesteps @2.60648e+10 Hz
Excitation signal length is: 1842 timesteps (9.55001e-10s)
Max. number of timesteps: 10000 ( --> 5.42888 * Excitation signal length)
Create FDTD engine (compressed SSE + multi-threading)
Running FDTD engine... this may take a while... grab a cup of coffee?!?
[@        4s] Timestep:         3546 || Speed:   37.9 MC/s (1.129e-03 s/TS) || Energy: ~2.14e-30 (-81.53dB)
Time for 3546 iterations with 42768.00 cells : 4.01 sec
Speed: 37.86 MCells/s
file: C:\Users\KyleBeatty\python\mwe\Rect_WGi_06-17_13-09\port_ut_0
file: C:\Users\KyleBeatty\python\mwe\Rect_WGi_06-17_13-09\port_it_0
Traceback (most recent call last):
  File "C:\Users\KyleBeatty\python\mwe\script.py", line 91, in <module>
    port.CalcPort(Sim_Path, freq)
  File "C:\Users\KyleBeatty\AppData\Local\Programs\Python\Python311\Lib\site-packages\openEMS\ports.py", line 379, in CalcPort
    super(WaveguidePort, self).CalcPort(sim_path, freq, ref_impedance, ref_plane_shift, signal_type)
  File "C:\Users\KyleBeatty\AppData\Local\Programs\Python\Python311\Lib\site-packages\openEMS\ports.py", line 105, in CalcPort
    self.ReadUIData(sim_path, freq, signal_type)
  File "C:\Users\KyleBeatty\AppData\Local\Programs\Python\Python311\Lib\site-packages\openEMS\ports.py", line 96, in ReadUIData
    self.i_data = UI_data(self.I_filenames, sim_path, freq, signal_type )
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\KyleBeatty\AppData\Local\Programs\Python\Python311\Lib\site-packages\openEMS\ports.py", line 44, in __init__
    tmp = np.loadtxt(os.path.join(path, fn),comments='%')
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\KyleBeatty\AppData\Local\Programs\Python\Python311\Lib\site-packages\numpy\lib\npyio.py", line 1373, in loadtxt
    arr = _read(fname, dtype=dtype, comment=comment, delimiter=delimiter,
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\KyleBeatty\AppData\Local\Programs\Python\Python311\Lib\site-packages\numpy\lib\npyio.py", line 1016, in _read
    arr = _load_from_filelike(
          ^^^^^^^^^^^^^^^^^^^^
ValueError: could not convert string '-04.4.92535963379e-12' to float64 at row 0, column 3.

port_it_0

% time-domain current mode matching by openEMS v0.0.36 @Mon Jun 17 13:09:10 2024
% start-coordinates: (0.000411538,0.000390909,0.0437543) m -> [1,1,111]
% stop-coordinates: (0.0102885,0.00390909,0.0437543) m -> [25,10,111]
% t/s   current mode_purity
2.5922945441e-13    -0  -04.4.92535963379e-12   -0  -0
9.59148981317e-12   -0  -0
1.42576199926e-11   -0  -0
1.89237501719e-11   -0  -0
2.35898803513e-11   -0  -0
2.82560105307e-11   -0  -0
3.29221407101e-11   -0  -0
3.75882708895e-11   -0  -0
4.22544010688e-11   -0  -0
4.69205312482e-11   -0  -0
5.15866614276e-11   -0  -0
5.6252791607e-11    -0  -0
6.09189217864e-11   -0  -0
6.55850519657e-11   -0  -0
7.02511821451e-11   -0  -0
7.49173123245e-11   -0  -0
7.95834425039e-11   -0  -0
8.42495726833e-11   -0  -0
8.89157028626e-11   -9.78133874256e-35  -0.996632614438
9.3581833042e-11    -4.06149317204e-31  -0.996633920959
9.82479632214e-11   -6.94492110087e-28  -0.996633920774
1.02914093401e-10   -5.25238438687e-25  -0.996633922279
1.0758022358e-10    -1.84560944446e-22  -0.996633927562
1.1224635376e-10    -3.1072505977e-20   -0.9966339204
1.16912483939e-10   -2.53540224643e-18  -0.996633921914
1.21578614118e-10   -9.89358009134e-17  -0.996633924393
1.26244744298e-10   -1.74597994974e-15  -0.996633918863
1.30910874477e-10   -1.1785180562e-14   -0.996633922419
1.35577004656e-10   -1.07156186645e-14  -0.99663392561
1.40243134836e-10   8.29699031628e-14   -0.996633921011
1.44909265015e-10   4.31538573206e-14   -0.996633910141
1.49575395195e-10   -8.29425240999e-14  -0.996633912157
1.54241525374e-10   -1.21917971136e-13  -0.996633926314
1.58907655553e-10   -7.7342996372e-14   -0.996633916907
1.63573785733e-10   -1.26308532363e-14  -0.996633955125
1.68239915912e-10   1.5271536217e-13    -0.996633925794
1.72906046091e-10   2.40379805083e-13   -0.996633917287
1.77572176271e-10   2.09558083533e-13   -0.996633916899
1.8223830645e-10    3.35789393529e-14   -0.996634010794
1.8690443663e-10    -2.01066359515e-13  -0.996633931928
1.91570566809e-10   -4.26921822911e-13  -0.996633920558
1.96236696988e-10   -5.04811906028e-13  -0.996633921362
2.00902827168e-10   -3.12314169773e-13  -0.996633913376
2.05568957347e-10   1.30772375019e-13   -0.996633844227
2.10235087527e-10   6.72892556075e-13   -0.996633929968
2.14901217706e-10   1.04102258953e-12   -0.996633917071
2.19567347885e-10   9.66112444278e-13   -0.996633922856
2.24233478065e-10   3.30241509135e-13   -0.996633903903
2.28899608244e-10   -7.18628364766e-13  -0.99663390448
2.33565738423e-10   -1.74927871925e-12  -0.996633919679
2.38231868603e-10   -2.18742759067e-12  -0.996633926975
2.42897998782e-10   -1.58722630032e-12  -0.996633909565
2.47564128962e-10   7.78420550591e-14   -0.996634059614
2.52230259141e-10   2.25973458186e-12   -0.996633914352
2.5689638932e-10    3.94763844017e-12   -0.996633921329
2.615625195e-10 4.07063707261e-12   -0.996633920882
2.66228649679e-10   2.06234026719e-12   -0.996633918709
2.70894779858e-10   -1.6715867424e-12   -0.996633911313
2.75560910038e-10   -5.67011788359e-12  -0.996633918436
2.80227040217e-10   -7.88217848348e-12  -0.996633930115
2.84893170397e-10   -6.5935163258e-12   -0.996633908129
2.89559300576e-10   -1.44887496834e-12  -0.996633999856
2.94225430755e-10   5.95759145747e-12   -0.996633931963
2.98891560935e-10   1.23694536051e-11   -0.996633922638
3.03557691114e-10   1.41297973709e-11   -0.996633919268
3.08223821294e-10   9.01362868119e-12   -0.996633919384
3.12889951473e-10   -2.19475221285e-12  -0.99663388903
3.17556081652e-10   -1.52951760745e-11  -0.99663392228
3.22222211832e-10   -2.39700739852e-11  -0.996633924722
3.26888342011e-10   -2.25497264097e-11  -0.996633916902
3.3155447219e-10    -9.1579819106e-12   -0.996633924871
3.3622060237e-10    1.23326702967e-11   -0.996633904659
3.40886732549e-10   3.28740181305e-11   -0.996633925206
3.45552862729e-10   4.1672414178e-11    -0.996633918249
3.50218992908e-10   3.13724677525e-11   -0.996633923857
3.54885123087e-10   2.69489648512e-12   -0.996634029116
3.59551253267e-10   -3.40315457678e-11  -0.996633924361
3.64217383446e-10   -6.19705770626e-11  -0.996633916981
3.68883513625e-10   -6.4958378226e-11   -0.996633923086
3.73549643805e-10   -3.59490063391e-11  -0.996633922807
3.78215773984e-10   1.73762902607e-11   -0.996633904337
3.82881904164e-10   7.33560069114e-11   -0.996633916151
3.87548034343e-10   1.04423437256e-10   -0.99663391976
3.92214164522e-10   8.98870662286e-11   -0.99663391447
3.96880294702e-10   2.78176419094e-11   -0.996633962367
4.01546424881e-10   -6.0230911081e-11   -0.996633937975
4.0621255506e-10    -1.35496826262e-10  -0.996633920498
4.1087868524e-10    -1.58212969878e-10  -0.996633925863
4.15544815419e-10   -1.07376486875e-10  -0.996633914165
4.20210945599e-10   5.2856202661e-12    -0.996633626408
4.24877075778e-10   1.35283966401e-10   -0.996633916726
4.29543205957e-10   2.21766536485e-10   -0.996633921101
4.34209336137e-10   2.14948873683e-10   -0.996633918433
4.38875466316e-10   1.02663279501e-10   -0.996633918546
4.43541596496e-10   -7.74370890534e-11  -0.996633937223
4.48207726675e-10   -2.48462430481e-10  -0.996633921773
4.52873856854e-10   -3.25993109762e-10  -0.996633919894
4.57539987034e-10   -2.58397596894e-10  -0.996633917424
4.62206117213e-10   -5.70173349185e-11  -0.996633921965
4.66872247392e-10   2.00225211444e-10   -0.996633928572
4.71538377572e-10   3.97422452385e-10   -0.996633927519
4.76204507751e-10   4.31847911072e-10   -0.996633914279
4.80870637931e-10   2.65603239117e-10   -0.996633930412
4.8553676811e-10    -4.75943599878e-11  -0.99663394181
4.90202898289e-10   -3.76792623472e-10  -0.996633920696
4.94869028469e-10   -5.67465576703e-10  -0.99663392204
4.99535158648e-10   -5.13065583475e-10  -0.996633920267
5.04201288827e-10   -2.11663450637e-10  -0.996633927758
5.08867419007e-10   2.21430079001e-10   -0.996633919582
5.13533549186e-10   5.96162433005e-10   -0.996633916277
5.18199679366e-10   7.30535120818e-10   -0.996633922861
5.22865809545e-10   5.38001239323e-10   -0.996633922506
5.27531939724e-10   7.77816212637e-11   -0.996633980043
5.32198069904e-10   -4.59625061801e-10  -0.996633932084
5.36864200083e-10   -8.30703739204e-10  -0.996633929582
5.41530330263e-10   -8.49194863465e-10  -0.996633921912
5.46196460442e-10   -4.78424794407e-10  -0.996633917398
5.50862590621e-10   1.39716930578e-10   -0.996633873026
5.55528720801e-10   7.37862324333e-10   -0.996633927168
5.6019485098e-10    1.03917770459e-09   -0.996633923333
5.64860981159e-10   8.85839025071e-10   -0.996633920538
5.69527111339e-10   3.20128223029e-10   -0.996633898648
5.74193241518e-10   -4.23065379219e-10  -0.996633948065
5.78859371698e-10   -1.01410284667e-09  -0.996633920853
5.83525501877e-10   -1.17596598946e-09  -0.996633919796
5.88191632056e-10   -8.14731245425e-10  -0.996633929524
5.92857762236e-10   -7.13393736698e-11  -0.996634013633
5.97523892415e-10   7.33081964178e-10   -0.996633925422
6.02190022594e-10   1.23737755415e-09   -0.996633921627
6.06856152774e-10   1.20421377862e-09   -0.996633921334
6.11522282953e-10   6.32501933985e-10   -0.996633920325
6.16188413133e-10   -2.35246516209e-10  -0.996633935951
6.20854543312e-10   -1.01700569777e-09  -0.996633929763
6.25520673491e-10   -1.36157445838e-09  -0.996633923377
6.30186803671e-10   -1.10826280801e-09  -0.996633929642
6.3485293385e-10    -3.62446337741e-10  -0.996633935432
6.3951906403e-10    5.48844434032e-10   -0.996633913646
6.44185194209e-10   1.22234506601e-09   -0.996633917166
6.48851324388e-10   1.35943074316e-09   -0.996633913922
6.53517454568e-10   9.00238809106e-10   -0.996633911264
6.58183584747e-10   5.00355072148e-11   -0.996633835366
6.62849714926e-10   -8.13884328574e-10  -0.996633920861
6.67515845106e-10   -1.31194004198e-09  -0.996633917009
6.72181975285e-10   -1.23125575552e-09  -0.996633920122
6.76848105465e-10   -6.17689508974e-10  -0.996633913715
6.81514235644e-10   2.49322236589e-10   -0.996633933831
6.86180365823e-10   9.8557803091e-10    -0.996633913973
6.90846496003e-10   1.27449493257e-09   -0.996633913723
6.95512626182e-10   1.00477647421e-09   -0.996633927831
7.00178756361e-10   3.12847205899e-10   -0.99663392957
7.04844886541e-10   -4.8580759965e-10   -0.9966339387
7.0951101672e-10    -1.04189034587e-09  -0.996633915594
7.141771469e-10 -1.12660901214e-09  -0.996633922627
7.18843277079e-10   -7.26221231906e-10  -0.996633909787
7.23509407258e-10   -3.76367314647e-11  -0.996633897143
7.28175537438e-10   6.28182387659e-10   -0.996633910587
7.32841667617e-10   9.87630969583e-10   -0.996633922948
7.37507797796e-10   9.05922063844e-10   -0.996633920613
7.42173927976e-10   4.46347107936e-10   -0.996633924736
7.46840058155e-10   -1.69866382745e-10  -0.996633926303
7.51506188335e-10   -6.69738577934e-10  -0.996633920593
7.56172318514e-10   -8.49835205779e-10  -0.996633918646
7.60838448693e-10   -6.58625797719e-10  -0.99663392409
7.65504578873e-10   -2.06873377776e-10  -0.99663390172
7.70170709052e-10   2.92912238921e-10   -0.996633907835
7.74836839232e-10   6.25944629072e-10   -0.996633916085
7.79502969411e-10   6.67143268958e-10   -0.996633931726
7.8416909959e-10    4.2643003896e-10    -0.996633924998
7.8883522977e-10    3.19381821319e-11   -0.996633673371
7.93501359949e-10   -3.35851615624e-10  -0.996633932489
7.98167490128e-10   -5.25941438093e-10  -0.996633926192
8.02833620308e-10   -4.7780929433e-10   -0.996633932786
8.07499750487e-10   -2.37476394241e-10  -0.996633938243
8.12165880667e-10   7.35160219883e-11   -0.996633852152
8.16832010846e-10   3.17831495482e-10   -0.996633884298
8.21498141025e-10   4.02015262972e-10   -0.996633907349
8.26164271205e-10   3.106376634e-10 -0.996633913119
8.30830401384e-10   1.03341264414e-10   -0.996633824882
8.35496531563e-10   -1.19486160174e-10  -0.996633991321
8.40162661743e-10   -2.63930927018e-10  -0.996633931996
8.44828791922e-10   -2.80991631113e-10  -0.996633928228
8.49494922102e-10   -1.81064450739e-10  -0.996633937201
8.54161052281e-10   -2.15248732742e-11  -0.996634195722
8.5882718246e-10    1.23702382682e-10   -0.996633844612
8.6349331264e-10    1.97239299056e-10   -0.996633869311
8.68159442819e-10   1.79681177464e-10   -0.996633894817
8.72825572999e-10   9.20236028847e-11   -0.996633915062
8.77491703178e-10   -1.91380681066e-11  -0.996634125158
8.82157833357e-10   -1.04823721166e-10  -0.996633898355
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    9.39363631165e-14   0.996599289969
thliebig commented 1 day ago

I think the problem is that you re-used the same port number. Ideally this should be allowed, but currently this seems to be broken. Just avoid this, this is usually not what you want...