thomasneff / Generative-Adversarial-Network-based-Synthesis-for-Supervised-Medical-Image-Segmentation

Code for the paper 'Generative Adversarial Network based Synthesis for Supervised Medical Image Segmentation'
MIT License
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RandomShuffleQueue error while running train.py #7

Closed aditipanda closed 6 years ago

aditipanda commented 6 years ago

before d gen 2 4 2048 before d real 2 4 2048 2018-09-04 14:58:47.443976: I tensorflow/core/platform/cpu_feature_guard.cc:140] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2 FMA 2018-09-04 14:58:47.499029: I tensorflow/stream_executor/cuda/cuda_gpu_executor.cc:898] successful NUMA node read from SysFS had negative value (-1), but there must be at least one NUMA node, so returning NUMA node zero 2018-09-04 14:58:47.499312: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1344] Found device 0 with properties: name: GeForce GTX 980 Ti major: 5 minor: 2 memoryClockRate(GHz): 1.076 pciBusID: 0000:01:00.0 totalMemory: 5.93GiB freeMemory: 5.45GiB 2018-09-04 14:58:47.499326: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1423] Adding visible gpu devices: 0 2018-09-04 14:58:47.680835: I tensorflow/core/common_runtime/gpu/gpu_device.cc:911] Device interconnect StreamExecutor with strength 1 edge matrix: 2018-09-04 14:58:47.680862: I tensorflow/core/common_runtime/gpu/gpu_device.cc:917] 0 2018-09-04 14:58:47.680868: I tensorflow/core/common_runtime/gpu/gpu_device.cc:930] 0: N 2018-09-04 14:58:47.681035: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1041] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 5221 MB memory) -> physical GPU (device: 0, name: GeForce GTX 980 Ti, pci bus id: 0000:01:00.0, compute capability: 5.2) Traceback (most recent call last): File "train.py", line 159, in tf.app.run() File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/platform/app.py", line 126, in run sys.exit(main(argv)) File "train.py", line 155, in main train() File "train.py", line 90, in train , g_loss_value, d_loss_value = sess.run([train_op, dcgan.losses['g'], dcgan.losses['d']]) File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/client/session.py", line 905, in run run_metadata_ptr) File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/client/session.py", line 1140, in _run feed_dict_tensor, options, run_metadata) File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/client/session.py", line 1321, in _do_run run_metadata) File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/client/session.py", line 1340, in _do_call raise type(e)(node_def, op, message) tensorflow.python.framework.errors_impl.OutOfRangeError: RandomShuffleQueue '_3_shuffle_batch/random_shuffle_queue' is closed and has insufficient elements (requested 128, current size 0) [[Node: shuffle_batch = QueueDequeueManyV2[component_types=[DT_FLOAT, DT_FLOAT], timeout_ms=-1, _device="/job:localhost/replica:0/task:0/device:CPU:0"](shuffle_batch/random_shuffle_queue, shuffle_batch/n)]]

Caused by op u'shuffle_batch', defined at: File "train.py", line 159, in tf.app.run() File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/platform/app.py", line 126, in run _sys.exit(main(argv)) File "train.py", line 155, in main train() File "train.py", line 54, in train images, segmentation_images = load_image_and_segmentation_from_idlist(idlist_tensor_img, idlist_tensor_seg, batch_size, 16, 2560, shift_params = [-128, -0.5], rescale_params = [128, 0.5], shuffle = True) File "/home/aditi/Documents/PhD/Steel_Seg/Data/Ground-Truth-Generation/GAN_trained_to_get_GT/Generative-Adversarial-Network-based-Synthesis-for-Supervised-Medical-Image-Segmentation-master/load_folder_images.py", line 92, in load_image_and_segmentation_from_idlist min_after_dequeue=min_queue_examples) File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/training/input.py", line 1301, in shuffle_batch name=name) File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/training/input.py", line 847, in _shuffle_batch dequeued = queue.dequeue_many(batch_size, name=name) File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/ops/data_flow_ops.py", line 483, in dequeue_many self._queue_ref, n=n, component_types=self._dtypes, name=name) File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/ops/gen_data_flow_ops.py", line 3476, in queue_dequeue_many_v2 component_types=component_types, timeout_ms=timeout_ms, name=name) File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/op_def_library.py", line 787, in _apply_op_helper op_def=op_def) File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/ops.py", line 3290, in create_op op_def=op_def) File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/ops.py", line 1654, in init self._traceback = self._graph._extract_stack() # pylint: disable=protected-access

OutOfRangeError (see above for traceback): RandomShuffleQueue '_3_shuffle_batch/random_shuffle_queue' is closed and has insufficient elements (requested 128, current size 0) [[Node: shuffle_batch = QueueDequeueManyV2[component_types=[DT_FLOAT, DT_FLOAT], timeout_ms=-1, _device="/job:localhost/replica:0/task:0/device:CPU:0"](shuffle_batch/random_shuffle_queue, shuffle_batch/n)]]

aditipanda commented 6 years ago

This is solved.