The Dataset used in this paper

thomasnguyen92 / MIMIC-IV-ICD-data-processing

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The Dataset used in this paper #5

Open LeiGong0125Carrot opened 3 months ago

LeiGong0125Carrot commented 3 months ago

Hello authors, do you utilized the /note/discharge_summary from MIMIC-IV or MIMIC-III? The notebooks/process commented that you guys are using the discharge summary downloaded from MIMIC-III, which confused me.

thomasnguyen92 commented 3 months ago

We utilize the MIMIC-IV dataset. Please refer to the instructions provided in the README.md file for guidance on accessing and using MIMIC-IV.

LeiGong0125Carrot commented 3 months ago

Hello, thanks for your replying. do you mean that I should directly download the the note/discharge summary from the MIMIC-IV-Note: Deidentified free-text clinical notes dataset right?

thomasnguyen92 commented 3 months ago

To utilize our code effectively, you must first obtain the complete MIMIC-IV dataset. If you have authorized access through PhysioNet, you can download the dataset by executing the following command: wget -r -N -c -np --user your_username --ask-password https://physionet.org/files/mimiciv/2.2/ Please ensure that you replace your_username with your actual PhysioNet username. After downloading, store the dataset in the mimicdata/physionet.org directory as indicated in the README.md file for proper integration with our code.

LeiGong0125Carrot commented 3 months ago

To utilize our code effectively, you must first obtain the complete MIMIC-IV dataset. If you have authorized access through PhysioNet, you can download the dataset by executing the following command: wget -r -N -c -np --user your_username --ask-password https://physionet.org/files/mimiciv/2.2/ Please ensure that you replace your_username with your actual PhysioNet username. After downloading, store the dataset in the mimicdata/physionet.org directory as indicated in the README.md file for proper integration with our code.

hello, actually in the mimiciv there is no note directory currently. Or is it updated so that the note is splitter into the mimiciv-note dataset. Do you mind checking that?

thomasnguyen92 commented 3 months ago

It appears that the organizer has divided the original dataset. Consequently, you should be able to download two separate files and place them in the same directory. I'll make sure to update the instructions in the README.md to reflect this change. Thank you for bringing this to my attention.

LeiGong0125Carrot commented 3 months ago

It appears that the organizer has divided the original dataset. Consequently, you should be able to download two separate files and place them in the same directory. I'll make sure to update the instructions in the README.md to reflect this change. Thank you for bringing this to my attention.

Thanks very much!