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thomasp85 / PanViz

D3 based visualisation for comparative genomics
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PanViz GUI outputs only PCA and tree as visualization #15

Open ekopylova opened 5 years ago

ekopylova commented 5 years ago

Hello, I tried using the PanVizGenerator() on the example pan genome (Pangenome.csv) and my own pangenome with EC & GO terms, however when I open the PanViz.html file, I can only see the MDS/PCA plots and the tree. Do you know why this could be? Thanks,

ernesfranco commented 4 years ago

Hi! I have the same issue. Have you been able to solve this problem @ekopylova ? Thank you!

rsiani commented 4 years ago

Hi, having the same problem. I am aware that lot of water has passed under the bridge since then, but where any of you able to fix it @ekopylova @ernesfranco ?

ernesfranco commented 4 years ago

Hi, @rsiani & @ekopylova. Finally, I was able to use PanVizGenerator on my data. I think the problem is the input file provided as example in the PanVizGenerator GUI. My sincere apologies for not having update this issue.

rsiani commented 4 years ago

Happy to know! Did you manage to get it running also with another object or just with example data?

ernesfranco commented 4 years ago

I was able to run it using my own data, which was formatted according to the instructions provided in the GUI.