Closed AlvarezMF closed 8 years ago
Scratch that, solved by updating line 217 to: file_in = open(barcodes, 'rU')
also, had to feed it a tab-delineated file, although it defaults to a .csv file.
I'm reworking many of the scripts to make sure dependency and other issues are tackled.
Prints a length of zero at the end - it looks like it's not properly reading the barcodes into the bc_dict dictionary, resulting in an empty dictionary. I'm attaching our barcodes file in .csv format, but we've tried tab-delimited as well. This results in empty files created at the end of the script.
barcodes.csv.zip