mapping_variant_calling.py, function run_STAR() only works with --input_dir

thomasvangurp / epiGBS

Code for working with epiGBS data

MIT License

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Open MWSchmid opened 7 years ago

MWSchmid commented 7 years ago

mapping_variant_calling.py, function run_STAR():

uses only the argument --input_dir

i.e., does not work if files are specified manually with --reads_R1, --reads_R2, and so on