Open thomasvangurp opened 8 years ago
Be aware that from excell saving as tab delimited does not yet produces the correct file format (the end of line code has to be adjusted using vi.... What was the command within vi Thomas?
added:
vi
i believe changing line 235 to : filein = open(barcodes, 'rU') might also do the job... PLEASE don't use spaces but in bar code sheet
I've just changed the relevant lines, I think it should work now.
did you changed the demultiplex SGBS script? i don't see the changes you made? I think my problem still leads back to the initial barcode file.... see mail... sometimes additional fields are placed in the sam file ??? see mail for picture...
Both demultiplex.py and demultiplexV2.0.py default to "barcodes.csv" as a default option; however, the code requires tab-delimited files, not comma-delimited.