thomsonlab scrap-viz issues

thomsonlab / scrap-viz

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Remove dependency on scVI

#61 dibidave opened 5 years ago
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Document dependency on iGraph

#60 dibidave opened 5 years ago
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scrap-init-ws breaks with pandas 0.24.2

#59 dibidave opened 5 years ago
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Allow custom gene value filter

#58 dibidave opened 5 years ago
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Allow viewing raw counts, normalized, or processed count data

#57 dibidave closed 5 years ago
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Show spinning wheel of death or something on wait

#56 dibidave closed 5 years ago
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Ignore union if label filter is empty

#55 dibidave opened 6 years ago
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Show cluster membership on hover

#54 dibidave opened 6 years ago
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Column ordering seems to be somewhat random on export

#53 dibidave opened 6 years ago
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Differential analysis doesn't reset

#52 jelliottrobinson opened 6 years ago
1
Entrez or Ensembl gene numbers

#51 jelliottrobinson opened 6 years ago
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Allow export of differential expression table

#50 dibidave closed 6 years ago
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Update requirements.txt

#49 dibidave opened 6 years ago
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Need subclustering

#48 jelliottrobinson opened 6 years ago
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Allow user to select colormap

#47 dibidave opened 6 years ago
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Add which is the source cluster to DE plot

#46 dibidave opened 6 years ago
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Union when no label is selected yields empty set

#45 dibidave closed 6 years ago
1
Heatmap for differential expression

#44 dibidave opened 6 years ago
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Delete auto clusters button

#43 dibidave opened 6 years ago
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Union doesn't work in conjunction with gene filter

#42 dibidave opened 6 years ago
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X-Y dimension dropdown goes to invalid

#41 dibidave opened 6 years ago
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Add button to show all auto clusters

#40 dibidave closed 6 years ago
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Consistent color scheme on cluster display

#39 dibidave closed 6 years ago
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View multiple clusters, one color per cluster

#38 dibidave closed 6 years ago
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Allow choosing dimension of projection

#37 dibidave closed 6 years ago
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Convert plot to static class

#36 dibidave opened 6 years ago
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Choose which components of PCA/tSNE to visualize

#35 dibidave closed 6 years ago
1
Allow both tSNE and PCA (and other projection methods) in clustering tab

#34 dibidave closed 6 years ago
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Allow saving of named data processing pipelines

#33 dibidave closed 6 years ago
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Filter out cells that have significant percentage of IEGs

#32 dibidave opened 6 years ago
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Look into empirical Brown's method

#31 dibidave opened 6 years ago
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Gene expression table -> gene info on hover + sortable

#30 dibidave opened 7 years ago
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Button to update mean gene expression and log2 fold change to selected

#29 dibidave opened 7 years ago
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Update group percentage stats based on currently selected

#28 dibidave opened 7 years ago
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Multiple gene filtering

#27 dibidave opened 7 years ago
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Recalculate mean after replacing zero counts

#26 dibidave opened 7 years ago
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Show gene card information by gene filter dropdown

#25 dibidave opened 7 years ago
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Strange behavior with some low count genes

#24 dibidave closed 7 years ago
1
Search by protein name in addition to gene name

#23 dibidave opened 7 years ago
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Can't use lasso tool anymore

#22 dibidave closed 6 years ago
1
Display differential gene expression by cell on click

#21 dibidave closed 7 years ago
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Allow renaming of labels

#20 dibidave opened 7 years ago
1
eCDF values do not seem to match table

#19 dibidave closed 7 years ago
1
Sort click

#18 dibidave closed 7 years ago
0
Add additional cluster visualization methods

#17 dibidave closed 6 years ago
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Replace state click data storage with previous data info

#16 dibidave opened 7 years ago
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Don't overwrite cell labels on save

#15 dibidave closed 7 years ago
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Sort by different de values

#14 dibidave closed 7 years ago
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Add preprocessing steps to GUI

#13 dibidave opened 7 years ago
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Choose dataset from GUI instead of script

#12 dibidave opened 7 years ago
0