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thoth-station / storages

Storage and database adapters for project Thoth
https://thoth-station.github.io/
GNU General Public License v3.0
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sqlalchemy.exc.IntegrityError: (psycopg2.errors.UniqueViolation) duplicate key value violates unique constraint "python_package_version_package_name_package_version_python__key" #1861

Closed pacospace closed 3 years ago

pacospace commented 4 years ago

Describe the bug sqlalchemy.exc.IntegrityError: (psycopg2.errors.UniqueViolation) duplicate key value violates unique constraint "python_package_version_package_name_package_version_python__key"

To Reproduce Steps to reproduce the behavior:

  1. Run Argo workflows with same inputs in the screenshot.

Alternatively:

  1. Take Pg dump from stage and sync in local postgres.
  2. Retrieve adviser-619d5ef4 document from Ceph.
  3. Try syncing locally that document.

Expected behavior Graph-sync adviser ends successfully

Screenshots Inputs:

Name:                adviser-619d5ef4
Namespace:           thoth-prod-tensorflow
ServiceAccount:      argo
Status:              Failed
Conditions:          
 Completed           True
Created:             Fri Jun 26 14:49:52 +0200 (2 days ago)
Started:             Fri Jun 26 14:49:52 +0200 (2 days ago)
Finished:            Fri Jun 26 14:53:44 +0200 (2 days ago)
Duration:            3 minutes 52 seconds
Parameters:          
  ceph_bucket_prefix: data/thoth
  ceph_bucket_name:  thoth
  ceph_host:         s3.upshift.redhat.com
  deployment_name:   thoth-psi-stage
  THOTH_ADVISER_JOB_ID: adviser-619d5ef4
  THOTH_DOCUMENT_ID: adviser-619d5ef4
  THOTH_LOG_ADVISER: INFO
  THOTH_ADVISER_TIMEOUT_SECONDS: 1500
  THOTH_ADVISER_REQUIREMENTS: [[source]]
url = "https://pypi.org/simple"
verify_ssl = true
name = "pypi"

[packages]
thoth-common = "*"
thoth-messaging = "*"
thoth-storages = "*"
prometheus-client = "<0.7.0"
thoth-python = "*"

[dev-packages]
pytest = "*"
pytest-timeout = "*"
pytest-cov = "*"
hypothesis-auto = "*"
hypothesis = "*"
pytest-mypy = "*"

[requires]
python_version = "3.6"

  THOTH_ADVISER_REQUIREMENTS_LOCKED: {
    "_meta": {
        "hash": {
            "sha256": "4bd95b946ff3b29fbaf63f34c11a20fe59e5185282b36a9822f7935fff6e5f93"
        },
        "pipfile-spec": 6,
        "requires": {
            "python_version": "3.6"
        },
        "sources": [
            {
                "name": "pypi",
                "url": "https://pypi.org/simple",
                "verify_ssl": true
            }
        ]
    },
    "default": {
        "aiocontextvars": {
            "hashes": [
                "sha256:885daf8261818767d8f7cbd79f9d4482d118f024b6586ef6e67980236a27bfa3",
                "sha256:f027372dc48641f683c559f247bd84962becaacdc9ba711d583c3871fb5652aa"
            ],
            "markers": "python_version < '3.7'",
            "version": "==0.2.2"
        },
        "aiohttp": {
            "hashes": [
                "sha256:1e984191d1ec186881ffaed4581092ba04f7c61582a177b187d3a2f07ed9719e",
                "sha256:259ab809ff0727d0e834ac5e8a283dc5e3e0ecc30c4d80b3cd17a4139ce1f326",
                "sha256:2f4d1a4fdce595c947162333353d4a44952a724fba9ca3205a3df99a33d1307a",
                "sha256:32e5f3b7e511aa850829fbe5aa32eb455e5534eaa4b1ce93231d00e2f76e5654",
                "sha256:344c780466b73095a72c616fac5ea9c4665add7fc129f285fbdbca3cccf4612a",
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                "sha256:b778ce0c909a2653741cb4b1ac7015b5c130ab9c897611df43ae6a58523cb965"
            ],
            "version": "==3.6.2"
        },
        "aiohttp-cors": {
            "hashes": [
                "sha256:0451ba59fdf6909d0e2cd21e4c0a43752bc0703d33fc78ae94d9d9321710193e",
                "sha256:4d39c6d7100fd9764ed1caf8cebf0eb01bf5e3f24e2e073fda6234bc48b19f5d"
            ],
            "version": "==0.7.0"
        },
        "alembic": {
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            ],
            "version": "==1.4.2"
        },
        "amun": {
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            ],
            "version": "==0.4.3"
        },
        "argo-workflows": {
            "hashes": [
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                "sha256:1d36d0e56c472c9af98cdfc21a0a9d3087227ee8d118310f2ac6649df124c5d5"
            ],
            "version": "==2.1.4"
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        "async-timeout": {
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            "version": "==3.0.1"
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        "attrdict": {
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            ],
            "version": "==2.0.1"
        },
        "attrs": {
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            "version": "==19.3.0"
        },
        "beautifulsoup4": {
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            "version": "==4.6.3"
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        "boto3": {
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        "botocore": {
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        "certifi": {
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            "version": "==2020.6.20"
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            "version": "==7.1.2"
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        "colorclass": {
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            "version": "==2.2.0"
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        "colorlog": {
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        "contextvars": {
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            "markers": "python_version < '3.7'",
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        "croniter": {
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  THOTH_ADVISER_LIBRARY_USAGE: {"report": {"thoth": ["thoth.messaging.MessageBase.app", "thoth.unresolved_package_handler.unresolved_package_handler.parse_unresolved_package_message", "thoth.messaging.MessageBase.app", "thoth.messaging.unresolved_package.UnresolvedPackageMessage", "thoth.unresolved_package_handler.unresolved_package_handler.unresolved_package_handler", "thoth.unresolved_package_handler.unresolved_package_handler.unresolved_package_handler", "thoth.common.__version__", "thoth.common.init_logging", "thoth.messaging.__version__", "thoth.python.__version__", "thoth.storages.__version__", "thoth.common.OpenShift", "thoth.python.Pipfile.from_dict", "thoth.storages.graph.GraphDatabase"], "setuptools": ["setuptools.command.test.test", "setuptools.setup"], "sys": ["sys.exit"], "pytest": ["pytest.main"], "prometheus_client": ["prometheus_client.CollectorRegistry", "prometheus_client.Gauge", "prometheus_client.push_to_gateway"]}, "version": "0.0.7"}
  THOTH_ADVISER_REQUIREMENTS_FORMAT: pipenv
  THOTH_ADVISER_RECOMMENDATION_TYPE: latest
  THOTH_ADVISER_RUNTIME_ENVIRONMENT: {"hardware": {"cpu_family": null, "cpu_model": null}, "operating_system": {"name": "ubi", "version": "8"}, "python_version": "3.6", "cuda_version": null, "name": "ubi8", "platform": null}
  THOTH_ADVISER_METADATA: {"github_event_type": "thoth_thamos_advise", "github_check_run_id": 811159682, "github_installation_id": 6181026, "github_base_repo_url": "https://api.github.com/repos/thoth-station/unresolved-package-handler", "origin": "https://github.com/harshad16/unresolved-package-handler", "re_run_adviser_id": null, "source_type": "GITHUB_APP"}
  THOTH_ADVISER_DEV: 0
  THOTH_ADVISER_SEED: 42
  THOTH_ADVISER_BEAM_WIDTH: 100000
  THOTH_ADVISER_LIMIT: 100000
  THOTH_ADVISER_COUNT: 1
  THOTH_ADVISER_LIMIT_LATEST_VERSIONS: 9999999
  THOTH_FORCE_SYNC:  0
  IMAGE_STREAM_REGISTRY: docker-registry.default.svc:5000
  IMAGE_STREAM_NAMESPACE: thoth-infra-stage
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STEP                           TEMPLATE                           PODNAME                      DURATION  MESSAGE
 ✖ adviser-619d5ef4            adviser                                                                                            
 ├-✔ advise                    advise/advise                      adviser-619d5ef4-3491563010  2m                                 
 ├-✖ graph-sync-advise         graph-sync/graph-sync                                                     No more retries left     
 | ├-✖ graph-sync-advise(0)    graph-sync/graph-sync              adviser-619d5ef4-1356120276  20s       failed with exit code 1  
 | ├-✖ graph-sync-advise(1)    graph-sync/graph-sync              adviser-619d5ef4-751978897   20s       failed with exit code 1  
 | ├-✖ graph-sync-advise(2)    graph-sync/graph-sync              adviser-619d5ef4-886052754   29s       failed with exit code 1  
 | └-✖ graph-sync-advise(3)    graph-sync/graph-sync              adviser-619d5ef4-3503111055  16s       failed with exit code 1  
 └-✔ trigger-finished-webhook  finished-webhook/finished-webhook  adviser-619d5ef4-3897517447  12s

Logs:

adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 99, "funcname": "setup_integrations", "created": 1593175946.5439086, "asctime": "2020-06-26 12:52:26,543", "msecs": 543.9085960388184, "relative_created": 6101.7091274261475, "process": 1, "message": "Setting up integrations (with default = True)"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 117, "funcname": "setup_integrations", "created": 1593175946.5477092, "asctime": "2020-06-26 12:52:26,547", "msecs": 547.7092266082764, "relative_created": 6105.5097579956055, "process": 1, "message": "Setting up previously not enabled integration sqlalchemy"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 117, "funcname": "setup_integrations", "created": 1593175946.548325, "asctime": "2020-06-26 12:52:26,548", "msecs": 548.3250617980957, "relative_created": 6106.125593185425, "process": 1, "message": "Setting up previously not enabled integration logging"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 117, "funcname": "setup_integrations", "created": 1593175946.5485075, "asctime": "2020-06-26 12:52:26,548", "msecs": 548.5074520111084, "relative_created": 6106.3079833984375, "process": 1, "message": "Setting up previously not enabled integration stdlib"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 117, "funcname": "setup_integrations", "created": 1593175946.5486956, "asctime": "2020-06-26 12:52:26,548", "msecs": 548.6955642700195, "relative_created": 6106.496095657349, "process": 1, "message": "Setting up previously not enabled integration excepthook"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 117, "funcname": "setup_integrations", "created": 1593175946.5488303, "asctime": "2020-06-26 12:52:26,548", "msecs": 548.8302707672119, "relative_created": 6106.630802154541, "process": 1, "message": "Setting up previously not enabled integration dedupe"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 117, "funcname": "setup_integrations", "created": 1593175946.5489671, "asctime": "2020-06-26 12:52:26,548", "msecs": 548.9671230316162, "relative_created": 6106.767654418945, "process": 1, "message": "Setting up previously not enabled integration atexit"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 117, "funcname": "setup_integrations", "created": 1593175946.5490868, "asctime": "2020-06-26 12:52:26,549", "msecs": 549.0868091583252, "relative_created": 6106.887340545654, "process": 1, "message": "Setting up previously not enabled integration modules"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 117, "funcname": "setup_integrations", "created": 1593175946.5492246, "asctime": "2020-06-26 12:52:26,549", "msecs": 549.2246150970459, "relative_created": 6107.025146484375, "process": 1, "message": "Setting up previously not enabled integration argv"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 117, "funcname": "setup_integrations", "created": 1593175946.549332, "asctime": "2020-06-26 12:52:26,549", "msecs": 549.3319034576416, "relative_created": 6107.132434844971, "process": 1, "message": "Setting up previously not enabled integration threading"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 142, "funcname": "setup_integrations", "created": 1593175946.5494318, "asctime": "2020-06-26 12:52:26,549", "msecs": 549.4318008422852, "relative_created": 6107.232332229614, "process": 1, "message": "Enabling integration sqlalchemy"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 142, "funcname": "setup_integrations", "created": 1593175946.549546, "asctime": "2020-06-26 12:52:26,549", "msecs": 549.5460033416748, "relative_created": 6107.346534729004, "process": 1, "message": "Enabling integration logging"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 142, "funcname": "setup_integrations", "created": 1593175946.5496066, "asctime": "2020-06-26 12:52:26,549", "msecs": 549.6065616607666, "relative_created": 6107.407093048096, "process": 1, "message": "Enabling integration stdlib"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 142, "funcname": "setup_integrations", "created": 1593175946.6249905, "asctime": "2020-06-26 12:52:26,624", "msecs": 624.9904632568359, "relative_created": 6182.790994644165, "process": 1, "message": "Enabling integration excepthook"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 142, "funcname": "setup_integrations", "created": 1593175946.625261, "asctime": "2020-06-26 12:52:26,625", "msecs": 625.2610683441162, "relative_created": 6183.061599731445, "process": 1, "message": "Enabling integration dedupe"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 142, "funcname": "setup_integrations", "created": 1593175946.62538, "asctime": "2020-06-26 12:52:26,625", "msecs": 625.3800392150879, "relative_created": 6183.180570602417, "process": 1, "message": "Enabling integration atexit"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 142, "funcname": "setup_integrations", "created": 1593175946.6254613, "asctime": "2020-06-26 12:52:26,625", "msecs": 625.4613399505615, "relative_created": 6183.261871337891, "process": 1, "message": "Enabling integration modules"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 142, "funcname": "setup_integrations", "created": 1593175946.6255295, "asctime": "2020-06-26 12:52:26,625", "msecs": 625.5295276641846, "relative_created": 6183.330059051514, "process": 1, "message": "Enabling integration argv"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "__init__", "lineno": 142, "funcname": "setup_integrations", "created": 1593175946.62559, "asctime": "2020-06-26 12:52:26,625", "msecs": 625.5900859832764, "relative_created": 6183.3906173706055, "process": 1, "message": "Enabling integration threading"}
adviser-619d5ef4-1356120276: {"name": "thoth.graph_sync_job", "levelname": "INFO", "module": "app", "lineno": 238, "funcname": "<module>", "created": 1593175946.6264014, "asctime": "2020-06-26 12:52:26,626", "msecs": 626.401424407959, "relative_created": 6184.201955795288, "process": 1, "message": "graph-sync-job v0.6.0+thoth_storage.0.22.9+thoth_common.0.13.3 starting..."}
adviser-619d5ef4-1356120276: {"name": "thoth.graph_sync_job", "levelname": "DEBUG", "module": "app", "lineno": 211, "funcname": "cli", "created": 1593175946.627327, "asctime": "2020-06-26 12:52:26,627", "msecs": 627.3269653320312, "relative_created": 6185.12749671936, "process": 1, "message": "Debug mode is on"}
adviser-619d5ef4-1356120276: {"name": "thoth.storages.graph.postgres", "levelname": "WARNING", "module": "postgres", "lineno": 286, "funcname": "connect", "created": 1593175947.2415822, "asctime": "2020-06-26 12:52:27,241", "msecs": 241.58215522766113, "relative_created": 6799.38268661499, "process": 1, "message": "Database schema is not up to date, you might encounter issues when manipulating with the database"}
adviser-619d5ef4-1356120276: {"name": "thoth.storages.graph.postgres", "levelname": "WARNING", "module": "postgres", "lineno": 4809, "funcname": "sync_adviser_result", "created": 1593175948.147118, "asctime": "2020-06-26 12:52:28,147", "msecs": 147.11809158325195, "relative_created": 7704.918622970581, "process": 1, "message": "No s2i flag stated in the adviser result 'adviser-619d5ef4'"}
adviser-619d5ef4-1356120276: {"name": "thoth.storages.graph.models_base", "levelname": "WARNING", "module": "models_base", "lineno": 60, "funcname": "get_or_create", "created": 1593175949.9352932, "asctime": "2020-06-26 12:52:29,935", "msecs": 935.2931976318359, "relative_created": 9493.093729019165, "process": 1, "message": "Integrity error on creating a new record; this can be due to concurrent writes to database, recovering (attributes: {'package_name': 'attrs', 'package_version': '19.3.0', 'python_package_index_id': 1, 'os_name': 'rhel', 'os_version': '8', 'python_version': '3.6', 'entity_id': 9, 'python_package_metadata_id': 73491}): (psycopg2.errors.UniqueViolation) duplicate key value violates unique constraint \"python_package_version_package_name_package_version_python__key\"\nDETAIL:  Key (package_name, package_version, python_package_index_id, os_name, os_version, python_version)=(attrs, 19.3.0, 1, rhel, 8, 3.6) already exists.\n\n[SQL: INSERT INTO python_package_version (package_name, package_version, os_name, os_version, python_version, entity_id, python_package_index_id, python_package_metadata_id, is_missing) VALUES (%(package_name)s, %(package_version)s, %(os_name)s, %(os_version)s, %(python_version)s, %(entity_id)s, %(python_package_index_id)s, %(python_package_metadata_id)s, %(is_missing)s) RETURNING python_package_version.id]\n[parameters: {'package_name': 'attrs', 'package_version': '19.3.0', 'os_name': 'rhel', 'os_version': '8', 'python_version': '3.6', 'entity_id': 9, 'python_package_index_id': 1, 'python_package_metadata_id': 73491, 'is_missing': False}]\n(Background on this error at: http://sqlalche.me/e/gkpj)"}
adviser-619d5ef4-1356120276: Traceback (most recent call last):
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/engine/base.py", line 1248, in _execute_context
adviser-619d5ef4-1356120276:     cursor, statement, parameters, context
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/engine/default.py", line 590, in do_execute
adviser-619d5ef4-1356120276:     cursor.execute(statement, parameters)
adviser-619d5ef4-1356120276: psycopg2.errors.UniqueViolation: duplicate key value violates unique constraint "python_package_version_package_name_package_version_python__key"
adviser-619d5ef4-1356120276: DETAIL:  Key (package_name, package_version, python_package_index_id, os_name, os_version, python_version)=(attrs, 19.3.0, 1, rhel, 8, 3.6) already exists.
adviser-619d5ef4-1356120276: The above exception was the direct cause of the following exception:
adviser-619d5ef4-1356120276: Traceback (most recent call last):
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/thoth/storages/graph/models_base.py", line 52, in get_or_create
adviser-619d5ef4-1356120276:     session.commit()
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/orm/session.py", line 1036, in commit
adviser-619d5ef4-1356120276:     self.transaction.commit()
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/orm/session.py", line 503, in commit
adviser-619d5ef4-1356120276:     self._prepare_impl()
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/orm/session.py", line 482, in _prepare_impl
adviser-619d5ef4-1356120276:     self.session.flush()
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/orm/session.py", line 2496, in flush
adviser-619d5ef4-1356120276:     self._flush(objects)
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/orm/session.py", line 2637, in _flush
adviser-619d5ef4-1356120276:     transaction.rollback(_capture_exception=True)
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/util/langhelpers.py", line 69, in __exit__
adviser-619d5ef4-1356120276:     exc_value, with_traceback=exc_tb,
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/util/compat.py", line 178, in raise_
adviser-619d5ef4-1356120276:     raise exception
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/orm/session.py", line 2597, in _flush
adviser-619d5ef4-1356120276:     flush_context.execute()
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/orm/unitofwork.py", line 422, in execute
adviser-619d5ef4-1356120276:     rec.execute(self)
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/orm/unitofwork.py", line 589, in execute
adviser-619d5ef4-1356120276:     uow,
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/orm/persistence.py", line 245, in save_obj
adviser-619d5ef4-1356120276:     insert,
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/orm/persistence.py", line 1136, in _emit_insert_statements
adviser-619d5ef4-1356120276:     statement, params
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/engine/base.py", line 984, in execute
adviser-619d5ef4-1356120276:     return meth(self, multiparams, params)
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/sql/elements.py", line 293, in _execute_on_connection
adviser-619d5ef4-1356120276:     return connection._execute_clauseelement(self, multiparams, params)
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/engine/base.py", line 1103, in _execute_clauseelement
adviser-619d5ef4-1356120276:     distilled_params,
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/engine/base.py", line 1288, in _execute_context
adviser-619d5ef4-1356120276:     e, statement, parameters, cursor, context
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/engine/base.py", line 1482, in _handle_dbapi_exception
adviser-619d5ef4-1356120276:     sqlalchemy_exception, with_traceback=exc_info[2], from_=e
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/util/compat.py", line 178, in raise_
adviser-619d5ef4-1356120276:     raise exception
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/engine/base.py", line 1248, in _execute_context
adviser-619d5ef4-1356120276:     cursor, statement, parameters, context
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/engine/default.py", line 590, in do_execute
adviser-619d5ef4-1356120276:     cursor.execute(statement, parameters)
adviser-619d5ef4-1356120276: sqlalchemy.exc.IntegrityError: (psycopg2.errors.UniqueViolation) duplicate key value violates unique constraint "python_package_version_package_name_package_version_python__key"
adviser-619d5ef4-1356120276: DETAIL:  Key (package_name, package_version, python_package_index_id, os_name, os_version, python_version)=(attrs, 19.3.0, 1, rhel, 8, 3.6) already exists.
adviser-619d5ef4-1356120276: [SQL: INSERT INTO python_package_version (package_name, package_version, os_name, os_version, python_version, entity_id, python_package_index_id, python_package_metadata_id, is_missing) VALUES (%(package_name)s, %(package_version)s, %(os_name)s, %(os_version)s, %(python_version)s, %(entity_id)s, %(python_package_index_id)s, %(python_package_metadata_id)s, %(is_missing)s) RETURNING python_package_version.id]
adviser-619d5ef4-1356120276: [parameters: {'package_name': 'attrs', 'package_version': '19.3.0', 'os_name': 'rhel', 'os_version': '8', 'python_version': '3.6', 'entity_id': 9, 'python_package_index_id': 1, 'python_package_metadata_id': 73491, 'is_missing': False}]
adviser-619d5ef4-1356120276: (Background on this error at: http://sqlalche.me/e/gkpj)
adviser-619d5ef4-1356120276: During handling of the above exception, another exception occurred:
adviser-619d5ef4-1356120276: Traceback (most recent call last):
adviser-619d5ef4-1356120276:   File "app.py", line 239, in <module>
adviser-619d5ef4-1356120276:     cli()
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/click/core.py", line 829, in __call__
adviser-619d5ef4-1356120276:     return self.main(*args, **kwargs)
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/click/core.py", line 782, in main
adviser-619d5ef4-1356120276:     rv = self.invoke(ctx)
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/click/core.py", line 1066, in invoke
adviser-619d5ef4-1356120276:     return ctx.invoke(self.callback, **ctx.params)
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/click/core.py", line 610, in invoke
adviser-619d5ef4-1356120276:     return callback(*args, **kwargs)
adviser-619d5ef4-1356120276:   File "app.py", line 219, in cli
adviser-619d5ef4-1356120276:     is_local=local_file,
adviser-619d5ef4-1356120276:   File "app.py", line 119, in _do_sync
adviser-619d5ef4-1356120276:     is_local=is_local,
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/thoth/storages/sync.py", line 617, in sync_documents
adviser-619d5ef4-1356120276:     to_sync_document_id, force=force, graceful=graceful, graph=graph, is_local=is_local
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/thoth/storages/sync.py", line 85, in sync_adviser_documents
adviser-619d5ef4-1356120276:     graph.sync_adviser_result(document)
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/thoth/storages/graph/postgres.py", line 4940, in sync_adviser_result
adviser-619d5ef4-1356120276:     overall_score=overall_score,
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/thoth/storages/graph/postgres.py", line 3727, in _create_python_software_stack
adviser-619d5ef4-1356120276:     session, requirements_lock, software_environment=software_environment, sync_only_entity=is_external
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/thoth/storages/graph/postgres.py", line 3553, in _create_python_packages_pipfile
adviser-619d5ef4-1356120276:     sync_only_entity=sync_only_entity,
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/thoth/storages/graph/postgres.py", line 3691, in _create_python_package_version
adviser-619d5ef4-1356120276:     python_package_metadata_id=python_package_metadata_id,
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/thoth/storages/graph/models_base.py", line 62, in get_or_create
adviser-619d5ef4-1356120276:     return session.query(cls).filter_by(**kwargs).one(), True
adviser-619d5ef4-1356120276:   File "/opt/app-root/lib/python3.6/site-packages/sqlalchemy/orm/query.py", line 3370, in one
adviser-619d5ef4-1356120276:     raise orm_exc.NoResultFound("No row was found for one()")
adviser-619d5ef4-1356120276: sqlalchemy.orm.exc.NoResultFound: No row was found for one()
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "atexit", "lineno": 51, "funcname": "_shutdown", "created": 1593175950.5331411, "asctime": "2020-06-26 12:52:30,533", "msecs": 533.1411361694336, "relative_created": 10090.941667556763, "process": 1, "message": "atexit: got shutdown signal"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "atexit", "lineno": 55, "funcname": "_shutdown", "created": 1593175950.5334198, "asctime": "2020-06-26 12:52:30,533", "msecs": 533.4198474884033, "relative_created": 10091.220378875732, "process": 1, "message": "atexit: shutting down client"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "transport", "lineno": 320, "funcname": "flush", "created": 1593175950.5335214, "asctime": "2020-06-26 12:52:30,533", "msecs": 533.5214138031006, "relative_created": 10091.32194519043, "process": 1, "message": "Flushing HTTP transport"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "worker", "lineno": 105, "funcname": "flush", "created": 1593175950.5335836, "asctime": "2020-06-26 12:52:30,533", "msecs": 533.5836410522461, "relative_created": 10091.384172439575, "process": 1, "message": "background worker got flush request"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "transport", "lineno": 212, "funcname": "_send_event", "created": 1593175950.5356958, "asctime": "2020-06-26 12:52:30,535", "msecs": 535.6957912445068, "relative_created": 10093.496322631836, "process": 1, "message": "Sending event, type:null level:error event_id:26dc33adc98b455bb8aab4c86f7b4c84 project:1298083 host:sentry.io"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "worker", "lineno": 116, "funcname": "_wait_flush", "created": 1593175950.6339295, "asctime": "2020-06-26 12:52:30,633", "msecs": 633.9294910430908, "relative_created": 10191.73002243042, "process": 1, "message": "0 event(s) pending on flush"}
adviser-619d5ef4-1356120276: Sentry is attempting to send 0 pending error messages
adviser-619d5ef4-1356120276: Waiting up to 2 seconds
adviser-619d5ef4-1356120276: Press Ctrl-C to quit
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "worker", "lineno": 109, "funcname": "flush", "created": 1593175950.778715, "asctime": "2020-06-26 12:52:30,778", "msecs": 778.7148952484131, "relative_created": 10336.515426635742, "process": 1, "message": "background worker flushed"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "transport", "lineno": 326, "funcname": "kill", "created": 1593175950.7790873, "asctime": "2020-06-26 12:52:30,779", "msecs": 779.0873050689697, "relative_created": 10336.887836456299, "process": 1, "message": "Killing HTTP transport"}
adviser-619d5ef4-1356120276: {"name": "sentry_sdk.errors", "levelname": "DEBUG", "module": "worker", "lineno": 92, "funcname": "kill", "created": 1593175950.7792995, "asctime": "2020-06-26 12:52:30,779", "msecs": 779.2994976043701, "relative_created": 10337.1000289917, "process": 1, "message": "background worker got kill request"}
pacospace commented 3 years ago

I think this also can be closed for now as sync logic and schema changed. See also https://github.com/thoth-station/storages/issues/1928