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tianbaochou / NasUnet

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requirements are not complete #10

Closed ghost closed 5 years ago

ghost commented 5 years ago

@tianbaochou Thank you for your hard work,

The requirements.txt file that you provided is not complete, and does not have all the packages required to run NasUnet properly. Can you upload environment.yml, which you can get by running this command:

conda env export > environment.yml
tianbaochou commented 5 years ago

@tianbaochou Thank you for your hard work,

The requirements.txt file that you provided is not complete, and does not have all the packages required to run NasUnet properly. Can you upload environment.yml, which you can get by running this command:

conda env export > environment.yml

I have updated the requirements.txt and readme.md file. All of the necessary packages are listed here.

ghost commented 5 years ago

@tianbaochou the 'requirements.txt' that you uploaded still have conflicts, I suggest that you create it using:

pip freeze > requirements.txt

Meanwhile, I uploaded environment.yml to install using conda. Please test before pulling, using:

wget https://raw.githubusercontent.com/deepseek/NasUnet/master/environment.yml
conda env create -f environment.yml
conda activate nasunet
tianbaochou commented 5 years ago

@tianbaochou the 'requirements.txt' that you uploaded still have conflicts, I suggest that you create it using:

pip freeze > requirements.txt

Meanwhile, I uploaded environment.yml to install using conda. Please test before pulling, using:

wget https://raw.githubusercontent.com/deepseek/NasUnet/master/environment.yml
conda env create -f environment.yml
conda activate nasunet

I use the cuda9.2 in docker. here is my environment.yml

adabound==0.0.5
asn1crypto==0.24.0
certifi==2018.4.16
cffi==1.11.5
chardet==3.0.4
conda==4.5.1
cryptography==2.2.2
cycler==0.10.0
decorator==4.4.0
graphviz==0.10.1
idna==2.6
imageio==2.5.0
kiwisolver==1.1.0
matplotlib==3.0.3
networkx==2.3
numpy==1.16.3
opencv-python==4.1.0.25
Pillow==6.0.0
protobuf==3.7.1
pycosat==0.6.3
pycparser==2.18
pydicom==1.2.2
pyOpenSSL==17.5.0
pyparsing==2.4.0
PySocks==1.6.8
python-dateutil==2.8.0
PyWavelets==1.0.3
PyYAML==5.1
requests==2.18.4
ruamel-yaml==0.15.35
scikit-image==0.15.0
scipy==1.2.1
SimpleITK==1.2.0
six==1.11.0
tensorboardX==1.6
torch==1.1.0
torchvision==0.2.2.post3
tqdm==4.31.1
urllib3==1.22

I have test my requirements.txt in a original minianaconda environment. everything is ok. However, the requests package is not included in your environment.yml. Anyway. thanks you for support my work.