How to filter the result by Rank

tianshilu / pMTnet

Deep Learning the T Cell Receptor Binding Specificity of Neoantigen

GNU General Public License v2.0

76 stars 20 forks source link

How to filter the result by Rank #15

Open pumpkin-hat opened 2 years ago

pumpkin-hat commented 2 years ago

Hi, I know that 'A lower rank considered a good prediction', but how can I select the credible CDR3-Antigen from the output? Could you please provide thresholds or any filter methods?

Thanks

wtwt5237 commented 2 years ago

Hi @pumpkin-hat

I suggest to go with 2% first. You may test your results a little bit using several cutoffs around 2% and pick the best one cutoff, if it is possible to do so.

Thanks!

Tao