Full TCR sequences of validation data

tianshilu / pMTnet

Deep Learning the T Cell Receptor Binding Specificity of Neoantigen

GNU General Public License v2.0

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Full TCR sequences of validation data #9

Open annaweber209 opened 2 years ago

annaweber209 commented 2 years ago

Thanks for this new tool and for the data you provide!

I am very interested to use the validation dataset you use to judge the performance of pMTnet, as I think you make a very valid point concerning the quality of data and its effect on model performance. However, I am currently using models that take the full TCR sequence into account. Do you maybe have the full TCR sequences or V and J gene usage information for the validation data?

wtwt5237 commented 2 years ago

Hello @annaweber209

We don't have full TCR sequence data or V/J gene information. Sorry about that

Just curious, which model/software you are working with?

Tao

annaweber209 commented 2 years ago

Ah, sad! I am working with TITAN. :)