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tidyomics / plyranges

A grammar of genomic data transformation
https://tidyomics.github.io/plyranges/
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remove mention of UCSC, as this has changed/not always applicable #98

Closed mikelove closed 11 months ago

mikelove commented 1 year ago

plyranges currently has a WARNING in devel and release based upon a man page link:

http://bioconductor.org/checkResults/devel/bioc-LATEST/plyranges/

Note that the exported function name has changed in GenomeInfoDb:

https://github.com/Bioconductor/GenomeInfoDb/blob/master/NAMESPACE

But generally things are changing so it's not always UCSC that is used to build the seq info.

Here I manually updated the man pages instead of using roxygen, you may want to re-run on your end.