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tidyomics
/
plyranges
A grammar of genomic data transformation
https://tidyomics.github.io/plyranges/
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safer unnesting of List columns
#60
sa-lee
closed
5 years ago
0
Vignette's titles links redirect to 404 - Page not found
#59
annaquaglieri16
closed
5 years ago
4
plyranges::filter not working with <CharacterList> objects
#58
annaquaglieri16
closed
5 years ago
6
Implement dplyr methods for DataFrame
#57
jonocarroll
closed
4 years ago
4
Fix typo
#56
iimog
closed
5 years ago
1
Conversion of IRanges to tibble strips metadata
#55
iimog
closed
5 years ago
3
overflow with summarising over large integer values
#54
sa-lee
opened
5 years ago
0
'summarize' converts GenomicRanges to DataFrame
#53
mschubert
closed
5 years ago
5
promote joins to S4 methods?
#52
sa-lee
opened
6 years ago
0
scoped variants of dplyr verbs
#51
sa-lee
closed
4 years ago
1
update for functions deprecated by rlang
#50
sa-lee
closed
6 years ago
4
Unexpected behaviour with stretching w/o anchor
#49
mschubert
closed
6 years ago
11
how flat is too flat?
#48
sa-lee
closed
5 years ago
1
anchoring redesign.
#47
sa-lee
opened
6 years ago
3
bedtools tutorial
#46
sa-lee
closed
5 years ago
1
structure of vignettes / new vignettes
#45
sa-lee
opened
6 years ago
0
improve figures for vignette
#44
sa-lee
opened
6 years ago
1
general improvements to documentation
#43
sa-lee
opened
6 years ago
0
`group_by` should throw an error here
#42
sa-lee
closed
6 years ago
0
Spellchecked
#41
Shians
closed
6 years ago
1
bind_ranges use Rle for .id variable rather than character
#40
sa-lee
closed
6 years ago
0
Implement gather/spread and unite/extract from tidyr
#39
sa-lee
closed
4 years ago
2
summarize doesn't work with weighted mean
#38
UnkindPartition
closed
4 years ago
3
group_by, filter, and reduce_ranges don't work together
#37
UnkindPartition
closed
6 years ago
6
Filtering ranges objects on seqnames does not work if package is not attached
#36
mschubert
closed
6 years ago
4
coordinate mapping
#35
lawremi
opened
6 years ago
0
blocks from BED files
#34
lawremi
opened
6 years ago
0
parallelisation
#33
sa-lee
opened
6 years ago
2
`count` method for Ranges
#32
sa-lee
opened
6 years ago
1
fix up Rd links for windows
#31
sa-lee
closed
4 years ago
1
'optimising' group_by operations
#30
sa-lee
opened
6 years ago
14
Aware of valr?
#29
PeteHaitch
closed
6 years ago
2
anchoring bug
#28
sa-lee
closed
6 years ago
13
refactor methods to reflect changes to Bioc3.7
#27
sa-lee
closed
6 years ago
1
make plyranges cheat sheet
#26
sa-lee
opened
6 years ago
0
R>3.5.0 requirements
#25
mschubert
closed
6 years ago
4
update tests to fix build error
#24
sa-lee
closed
6 years ago
0
`combine_ranges()`
#23
lawremi
closed
6 years ago
3
dplyr::n() method
#22
sa-lee
closed
6 years ago
0
flank() and ignore.strand
#21
lawremi
closed
6 years ago
0
as_(i)(g)ranges method
#20
sa-lee
closed
6 years ago
0
summarise should return a DataFrame
#19
sa-lee
closed
6 years ago
1
filter should follow the dplyr generic
#18
sa-lee
closed
6 years ago
0
Formalise anchoring
#17
sa-lee
closed
6 years ago
1
Deferred I/O
#16
sa-lee
opened
6 years ago
11
`read_bam()` return value
#15
lawremi
opened
6 years ago
5
coverage
#14
lawremi
closed
6 years ago
1
other endomorphic methods
#13
sa-lee
opened
6 years ago
1
implement arrange method
#12
sa-lee
closed
6 years ago
0
documentation with examples
#11
sa-lee
closed
6 years ago
0
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