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tidyomics / tidyomicsWorkshop

Tidy genomic and transcriptomic analyses
https://tidyomics.github.io/tidyomicsWorkshop/
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Package python is not available #4

Closed mikelove closed 1 year ago

mikelove commented 1 year ago 
Package python is not available, but is referred to by another package.
This may mean that the package is missing, has been obsoleted, or
is only available from another source
However the following packages replace it:
  2to3 python2-minimal python2 dh-python python-is-python3

E: Package 'python' has no installation candidate
Error: Process completed with exit code 100.

https://github.com/tidybiology/tidyomicsWorkshop/actions/runs/5330356013/jobs/9656956305

mikelove commented 1 year ago

@stemangiola have you surmounted this before?

stemangiola commented 1 year ago

Github actions drive my crazy. @mblue9 is the expert here :) Maria, did you solve this before?

mblue9 commented 1 year ago

Hey! I think @michaelplynch may have encountered this one

michaelplynch commented 1 year ago

This might be worth a try: https://github.com/michaelplynch/demultiplexing-bioc23/blob/main/.github/workflows/basic_checks.yaml Its my solution for the trouble the standard buildabiocworkshop actions was having with reticulate based dependencies.

mikelove commented 1 year ago

Ok, I removed the Seurat-related vignettes (eval=FALSE) and data objects (seurat_data/) and now the package builds and checks fine.