Describe the bug
HDF5/h5py installation seems broken.
To Reproduce
Run e.g. boostrap in ddf pipeline.
Expected behaviour
A description of what you expected to happen.
Logs or error messages
/opt/lofar/pyenv-py3/lib64/python3.11/site-packages/h5py/__init__.py:36: UserWarning: h5py is running against HDF5 1.14.3 when it was built against 1.14.4, this may cause problems
_warn(("h5py is running against HDF5 {0} when it was built against {1}, "
Traceback (most recent call last):
File "/opt/lofar/ddf-pipeline/scripts/bootstrap.py", line 281, in <module>
run_bootstrap(o)
File "/opt/lofar/ddf-pipeline/scripts/bootstrap.py", line 189, in run_bootstrap
fitting_factors.run_all(1, name=obsid)
File "/opt/lofar/ddf-pipeline/utils/fitting_factors.py", line 93, in run_all
import emcee
File "/opt/lofar/pyenv-py3/lib/python3.11/site-packages/emcee/__init__.py", line 24, in <module>
from . import autocorr, backends, moves
File "/opt/lofar/pyenv-py3/lib/python3.11/site-packages/emcee/backends/__init__.py", line 4, in <module>
from .hdf import HDFBackend, TempHDFBackend
File "/opt/lofar/pyenv-py3/lib/python3.11/site-packages/emcee/backends/hdf.py", line 17, in <module>
import h5py
File "/opt/lofar/pyenv-py3/lib64/python3.11/site-packages/h5py/__init__.py", line 45, in <module>
from ._conv import register_converters as _register_converters, \
File "h5py/_conv.pyx", line 1, in init h5py._conv
File "h5py/h5r.pyx", line 1, in init h5py.h5r
File "h5py/h5p.pyx", line 1, in init h5py.h5p
File "h5py/h5t.pyx", line 164, in init h5py.h5t
File "h5py/h5t.pyx", line 83, in h5py.h5t.lockid
File "h5py/h5t.pyx", line 52, in h5py.h5t.typewrap
ValueError: Not a datatype (not a datatype)
Describe the bug HDF5/h5py installation seems broken.
To Reproduce Run e.g. boostrap in ddf pipeline.
Expected behaviour A description of what you expected to happen.
Logs or error messages
Additional information (if applicable or known): 5.3.0/5.3.1 Possibly related to https://github.com/h5py/h5py/issues/2436