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tilschaef / scRNA-seq

From fastq to preprocessed counttable (for in-house CELSeq2 method), with Kallisto | Bustools workflow.
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Output of params settings #12

Closed Rebecza closed 3 years ago

Rebecza commented 3 years ago

Question: Would it be possible to generate an overview with all the Parameter settings used for the knit?

This is especially useful when running this script separate of the s2s workflow, because there is no documentation of the used settings in a config file there.

At the moment, this information is not visible in the knit. (Maybe we could print it somewhere at the bottom of the file?)

tilschaef commented 3 years ago

There should be a way to save the params object to a yam, txt file. Will have a look

tilschaef commented 3 years ago

Added function to write settings to .yaml file in the output directory.