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tilschaef
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scRNA-seq
From fastq to preprocessed counttable (for in-house CELSeq2 method), with Kallisto | Bustools workflow.
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Bug bashing
#16
Closed
tilschaef
closed
3 years ago
tilschaef
commented
3 years ago
Added options to supply sample-level meta-data csv. A meta data record can be matched to multiple cell-identifiers.
Added options to supply cell level meta-data csv. Each meta data entry is exactly matched to its corresponding cell identifier.
Added option to create basic meta information based on sample identifier/library when no meta-data is supplied.
A barcode/well column is now automatically appended to meta data.
Removed
here
file dependencies
Write markdown parameters to yaml
Small code refactoring
herefile dependencies