The reclassification step (aligater reclass --uniq --save database.jlz < lig/*blast.filtered.lig) works only with Julia 0.4. If you use 0.5 it will ask for 0.4. So the documentation should change to ask specifically for 0.4.
Thanks for letting me know! I have not yet added support for Julia 0.5, but plan to do so eventually. I have updated the readme's Julia requirement in f9282f1 to reflect this. Thanks!
The reclassification step (aligater reclass --uniq --save database.jlz < lig/*blast.filtered.lig) works only with Julia 0.4. If you use 0.5 it will ask for 0.4. So the documentation should change to ask specifically for 0.4.