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timbitz / Aligater

Software suite for detection/analysis of chimeric RNAs from LIGR-seq data
MIT License
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Blast problem #5

Closed fgypas closed 7 years ago

fgypas commented 7 years ago

Hi

In the documentation you mention to download the following BLAST databases: "nr, human_genomic, other_genomic"

I got an error at the post step and after searching on the code it seems that the databases that one should use is nt and not nr. More specifically on line 44 of Aligater/bin/post.pl you have the following line: my $blastDb = "human_genomic,other_genomic,nt"

Based on this should I use the nt database and not the nr?

Thank you in advance Foivos

timbitz commented 7 years ago

Ahh... typo! nt is the correct database. Thank you for pointing that out!! The typo has been corrected in 2cacac0.