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timbitz / Whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level
MIT License
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Update Whippet to current julia version v1.5.3 #109

Closed timbitz closed 3 years ago

timbitz commented 3 years ago

This PR provides compatibility changes to bring Whippet up to julia version v1.5.3

codecov[bot] commented 3 years ago

Codecov Report

Merging #109 (ce66bb5) into master (43adda7) will decrease coverage by 0.25%. The diff coverage is 65.22%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #109      +/-   ##
==========================================
- Coverage   56.80%   56.55%   -0.25%     
==========================================
  Files          18       18              
  Lines        2396     2403       +7     
==========================================
- Hits         1361     1359       -2     
- Misses       1035     1044       +9
Impacted Files Coverage Δ
src/sgkmer.jl 80.00% <33.33%> (ø)
src/quant.jl 56.42% <40.00%> (-1.11%) :arrow_down:
src/bam.jl 92.31% <50.00%> (ø)
src/events.jl 56.35% <50.00%> (ø)
src/fmindex_patch.jl 93.33% <80.00%> (-6.67%) :arrow_down:
src/graph.jl 92.92% <100.00%> (ø)
src/refset.jl 91.39% <100.00%> (ø)
src/types.jl 76.92% <100.00%> (+6.92%) :arrow_up:
src/edges.jl 70.97% <0.00%> (-1.61%) :arrow_down:
... and 1 more

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