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timbitz / Whippet.jl

Lightweight and Fast; RNA-seq quantification at the event-level
MIT License
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Where is "graph.jls"? #127

Closed justinjisu closed 2 years ago

justinjisu commented 2 years ago

Hi Tim,

I'm currently trying to build a bam supplemented index; however, I'm getting the following error code: ERROR: LoadError: SystemError: opening file "~/Whippet.jl/bin/../index/graph.jls": No such file or directory

Is there supposed to be an index/graph.jls file or is this produced during index generation? How can I correct this error?

Thank you in advance!

timbitz commented 2 years ago

@justinjisu graph.jls is the index that you need to build by running whippet-index.jl. It is output, not input that is missing-- the default is trying to write to a folder /index/ that you haven't created. Try specifying the output name with -x/--index

justinjisu commented 2 years ago

Thank you! That solved my problems.